Aliases for LINC01085 Gene

Subcategory (RNA class) for LINC01085 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01085 Gene

  • Long Intergenic Non-Protein Coding RNA 1085 2 3 5
  • NONHSAG037523 92
  • HSALNG0033014 167
  • Lnc-CPEB2-18 168
  • LINC01085 2

External Ids for LINC01085 Gene

Summaries for LINC01085 Gene

GeneCards Summary for LINC01085 Gene

LINC01085 (Long Intergenic Non-Protein Coding RNA 1085) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01085 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01085 Gene

Genomics for LINC01085 Gene

GeneHancer (GH) Regulatory Elements for LINC01085 Gene

Promoters and enhancers for LINC01085 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J014111 Promoter 0.6 Ensembl 500.7 +0.1 133 0.6 FOSL2 NR3C1 JUND POLR2A SP1 LINC01085 lnc-CPEB2-18
GH04J014110 Enhancer 0.4 ENCODE 500.7 -1.3 -1266 0 FOS JUND CEBPB LINC01085 lnc-BOD1L1-5
GH04J014112 Promoter 0.3 Ensembl 500.7 +0.7 732 0.2 LINC01085 lnc-CPEB2-18
GH04J014125 Enhancer 0.9 Ensembl ENCODE 7.8 +14.3 14333 4.2 EP300 TRIM22 BCL11A ARNT MEF2B NBN SPI1 SMARCA5 BATF ELF1 lnc-CPEB2-18 LINC01085
GH04J014855 Enhancer 1.3 FANTOM5 Ensembl ENCODE 5.1 +744.8 744833 4.4 ZNF217 TCF12 SP1 JUND FOS EP300 ZBTB11 RELA MEF2C MYC LINC01085 CPEB2 CC2D2A lnc-FBXL5-13 LINC00504 piR-47211-510
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01085 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01085 Gene

Genomic Locations for LINC01085 Gene
chr4:14,111,968-14,140,052
(GRCh38/hg38)
Size:
28,085 bases
Orientation:
Plus strand
chr4:14,113,592-14,141,676
(GRCh37/hg19)
Size:
28,085 bases
Orientation:
Plus strand

Genomic View for LINC01085 Gene

Genes around LINC01085 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01085 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01085 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01085 Gene

Proteins for LINC01085 Gene

Post-translational modifications for LINC01085 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01085 Gene

Domains & Families for LINC01085 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01085 Gene

Function for LINC01085 Gene

Phenotypes From GWAS Catalog for LINC01085 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01085 Gene

Localization for LINC01085 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01085 Gene

Pathways & Interactions for LINC01085 Gene

PathCards logo

SuperPathways for LINC01085 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01085 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01085 Gene

Drugs & Compounds for LINC01085 Gene

No Compound Related Data Available

Transcripts for LINC01085 Gene

mRNA/cDNA for LINC01085 Gene

7 RNACentral transcripts :
1 REFSEQ mRNAs :
7 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01085 Gene

No ASD Table

Relevant External Links for LINC01085 Gene

GeneLoc Exon Structure for
LINC01085

Expression for LINC01085 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01085 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01085

genes like me logo Genes that share expression patterns with LINC01085: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01085 Gene

Orthologs for LINC01085 Gene

Evolution for LINC01085 Gene

ENSEMBL:
Gene Tree for LINC01085 (if available)
TreeFam:
Gene Tree for LINC01085 (if available)

No data available for Orthologs for LINC01085 Gene

Paralogs for LINC01085 Gene

No data available for Paralogs for LINC01085 Gene

Variants for LINC01085 Gene

Additional dbSNP identifiers (rs#s) for LINC01085 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01085 Gene

Variant ID Type Subtype PubMed ID
nsv829867 CNV gain+loss 17160897

Additional Variant Information for LINC01085 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01085

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01085 Gene

Disorders for LINC01085 Gene

Additional Disease Information for LINC01085

No disorders were found for LINC01085 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01085 Gene

Publications for LINC01085 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC01085 Gene

Sources for LINC01085 Gene