Aliases for LINC01082 Gene

Subcategory (RNA class) for LINC01082 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01082 Gene

  • Long Intergenic Non-Protein Coding RNA 1082 2 3 5
  • LINC01082 2 170
  • Long Noncoding RNA TCONS_00024492 3
  • LncRNA TCONS_00024492 3
  • TCONS_00024492 3
  • NONHSAG020212 94
  • HSALNG0113270 169

External Ids for LINC01082 Gene

Previous GeneCards Identifiers for LINC01082 Gene

  • GC16P086231

Summaries for LINC01082 Gene

GeneCards Summary for LINC01082 Gene

LINC01082 (Long Intergenic Non-Protein Coding RNA 1082) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01082 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01082 Gene

Genomics for LINC01082 Gene

GeneHancer (GH) Regulatory Elements for LINC01082 Gene

Promoters and enhancers for LINC01082 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J086193 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 +2.2 2172 10.2 GATA3 ZNF217 HLF NCOA3 MYC PKNOX1 ZIC2 RNF2 CTBP1 NFE2 ENSG00000268505 LINC00917 FOXF1 LOC101928582 LINC01082
GH16J086192 Enhancer 0.5 Ensembl dbSUPER 0.6 -4.1 -4053 0.6 ZBTB17 EZH2 LINC01082 RF00017-2181
GH16J086191 Enhancer 0.5 FANTOM5 dbSUPER 0.6 -4.7 -4704 0 ZBTB17 LINC01082 RF00017-2181
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01082 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01082 Gene

Genomic Locations for LINC01082 Gene
chr16:86,195,954-86,199,720
(GRCh38/hg38)
Size:
3,767 bases
Orientation:
Plus strand
chr16:86,229,786-86,233,326
(GRCh37/hg19)
Size:
3,541 bases
Orientation:
Plus strand

Genomic View for LINC01082 Gene

Genes around LINC01082 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01082 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01082 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01082 Gene

Proteins for LINC01082 Gene

Post-translational modifications for LINC01082 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01082 Gene

Domains & Families for LINC01082 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01082 Gene

Function for LINC01082 Gene

Phenotypes From GWAS Catalog for LINC01082 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01082 Gene

Localization for LINC01082 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01082 Gene

Pathways & Interactions for LINC01082 Gene

PathCards logo

SuperPathways for LINC01082 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01082 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01082 Gene

Drugs & Compounds for LINC01082 Gene

No Compound Related Data Available

Transcripts for LINC01082 Gene

mRNA/cDNA for LINC01082 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(11) RNACentral transcripts :
(7) LNCipedia transcripts :
(4) NONCODE transcripts :
(6) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01082 Gene

No ASD Table

Relevant External Links for LINC01082 Gene

GeneLoc Exon Structure for
LINC01082
ECgene alternative splicing isoforms for
LINC01082

Expression for LINC01082 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01082 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01082 Gene

This gene is overexpressed in Testis (x13.7), Bladder (x6.8), Prostate (x5.8), Esophagus - Gastroesophageal Junction (x5.8), Colon - Sigmoid (x4.3), and Colon - Transverse (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of LINC01082 Gene:

LINC01082
genes like me logo Genes that share expression patterns with LINC01082: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01082 Gene

Orthologs for LINC01082 Gene

Evolution for LINC01082 Gene

ENSEMBL:
Gene Tree for LINC01082 (if available)
TreeFam:
Gene Tree for LINC01082 (if available)

No data available for Orthologs for LINC01082 Gene

Paralogs for LINC01082 Gene

No data available for Paralogs for LINC01082 Gene

Variants for LINC01082 Gene

Sequence variations from dbSNP and Humsavar for LINC01082 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000056305 -- 86,195,926(+) C/G upstream_transcript_variant
rs1000174798 -- 86,195,013(+) T/C upstream_transcript_variant
rs1000489053 -- 86,197,237(+) G/C intron_variant
rs1000624638 -- 86,196,194(+) C/T non_coding_transcript_variant
rs1000995708 -- 86,197,771(+) GTGTAGAG/ intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01082 Gene

Variant ID Type Subtype PubMed ID
esv4262 OTHER complex 18987735
nsv483044 CNV gain 15286789
nsv833317 CNV gain 17160897

Additional Variant Information for LINC01082 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01082

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01082 Gene

Disorders for LINC01082 Gene

Additional Disease Information for LINC01082

No disorders were found for LINC01082 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01082 Gene

Publications for LINC01082 Gene

No publications were found for LINC01082 Gene.

Products for LINC01082 Gene

Sources for LINC01082 Gene