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Aliases for LINC01077 Gene

Subcategory (RNA class) for LINC01077 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01077 Gene

  • Long Intergenic Non-Protein Coding RNA 1077 2 3 5

External Ids for LINC01077 Gene

Previous GeneCards Identifiers for LINC01077 Gene

  • GC13M049146
  • GC00U935318

Summaries for LINC01077 Gene

GeneCards Summary for LINC01077 Gene

LINC01077 (Long Intergenic Non-Protein Coding RNA 1077) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01077 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01077 Gene

Genomics for LINC01077 Gene

GeneHancer (GH) Regulatory Elements for LINC01077 Gene

Promoters and enhancers for LINC01077 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J048574 Enhancer 0.5 FANTOM5 dbSUPER 600.7 -0.9 -944 0.1 LINC01077 RB1 RCBTB2 FNDC3A LPAR6 CYSLTR2 LINC00462 GC13P048533
GH13J048567 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.4 3356 5.9 ELF3 CEBPG SOX13 CEBPA SP1 RCOR2 PKNOX1 TCF7 FOXA2 YY1 LOC105370201 RB1 RCBTB2 LPAR6 RB1-DT FNDC3A LINC01077 GC13P048533
GH13J048577 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 -5.8 -5798 2 SP1 ZNF687 RELA CREM MLLT1 ZBED1 IKZF1 BACH1 IKZF2 CTCF LINC00462 RB1 RCBTB2 LPAR6 FNDC3A ITM2B LINC01077 GC13P048533
GH13J048580 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.4 -7.2 -7163 0.4 CTCF ZNF384 RAD21 REST TRIM22 SMC3 ZNF654 ZNF362 LINC00462 LOC105370202 RB1 RCBTB2 LPAR6 FNDC3A LINC01077 GC13P048533
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01077 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01077 Gene

Genomic Locations for LINC01077 Gene
chr13:48,570,639-48,573,317
(GRCh38/hg38)
Size:
2,679 bases
Orientation:
Minus strand

Genomic View for LINC01077 Gene

Genes around LINC01077 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01077 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01077 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LINC01077 Gene

Proteins for LINC01077 Gene

Post-translational modifications for LINC01077 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01077 Gene

Domains & Families for LINC01077 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01077 Gene

Function for LINC01077 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01077 Gene

Localization for LINC01077 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01077 Gene

Pathways & Interactions for LINC01077 Gene

PathCards logo

SuperPathways for LINC01077 Gene

No Data Available

Interacting Proteins for LINC01077 Gene

Gene Ontology (GO) - Biological Process for LINC01077 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01077 Gene

Drugs & Compounds for LINC01077 Gene

No Compound Related Data Available

Transcripts for LINC01077 Gene

mRNA/cDNA for LINC01077 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01077 Gene

No ASD Table

Relevant External Links for LINC01077 Gene

GeneLoc Exon Structure for
LINC01077
ECgene alternative splicing isoforms for
LINC01077

Expression for LINC01077 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01077 Gene:

LINC01077
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01077 Gene

Orthologs for LINC01077 Gene

Evolution for LINC01077 Gene

ENSEMBL:
Gene Tree for LINC01077 (if available)
TreeFam:
Gene Tree for LINC01077 (if available)

No data available for Orthologs for LINC01077 Gene

Paralogs for LINC01077 Gene

No data available for Paralogs for LINC01077 Gene

Variants for LINC01077 Gene

Additional Variant Information for LINC01077 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01077

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01077 Gene

Disorders for LINC01077 Gene

No disorders were found for LINC01077 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01077 Gene

Publications for LINC01077 Gene

No publications were found for LINC01077 Gene.

No data available for External Links for LINC01077 Gene

Products for LINC01077 Gene

Sources for LINC01077 Gene

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