Aliases for LINC01077 Gene
Subcategory (RNA class) for LINC01077 Gene
non-coding RNA
Quality Score for this RNA gene is
13
External Ids for LINC01077 Gene
- HGNC: 49120
- Entrez Gene: 107080621
- Ensembl: ENSG00000233456
Previous GeneCards Identifiers for LINC01077 Gene
- GC13M049146
- GC00U935318
Summaries for LINC01077 Gene
GeneCards Summary for LINC01077 Gene
LINC01077 (Long Intergenic Non-Protein Coding RNA 1077) is an RNA Gene, and is affiliated with the non-coding RNA class.
Additional gene information for LINC01077 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01077 Gene
Genomics for LINC01077 Gene
GeneHancer (GH) Regulatory Elements for LINC01077 Gene
Promoters and enhancers for LINC01077 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH13J048574 | Enhancer | 0.5 | FANTOM5 dbSUPER | 600.7 | -0.9 | -944 | 0.1 | LINC01077 RB1 RCBTB2 FNDC3A LPAR6 CYSLTR2 LINC00462 GC13P048533 | ||
| GH13J048567 | Promoter/Enhancer | 1.6 | FANTOM5 Ensembl ENCODE dbSUPER | 0.7 | +3.4 | 3356 | 5.9 | ELF3 CEBPG SOX13 CEBPA SP1 RCOR2 PKNOX1 TCF7 FOXA2 YY1 | LOC105370201 RB1 RCBTB2 LPAR6 RB1-DT FNDC3A LINC01077 GC13P048533 | |
| GH13J048577 | Enhancer | 1.3 | FANTOM5 ENCODE dbSUPER | 0.4 | -5.8 | -5798 | 2 | SP1 ZNF687 RELA CREM MLLT1 ZBED1 IKZF1 BACH1 IKZF2 CTCF | LINC00462 RB1 RCBTB2 LPAR6 FNDC3A ITM2B LINC01077 GC13P048533 | |
| GH13J048580 | Enhancer | 1 | FANTOM5 ENCODE dbSUPER | 0.4 | -7.2 | -7163 | 0.4 | CTCF ZNF384 RAD21 REST TRIM22 SMC3 ZNF654 ZNF362 | LINC00462 LOC105370202 RB1 RCBTB2 LPAR6 FNDC3A LINC01077 GC13P048533 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01077 on UCSC Golden Path with GeneCards custom track
Genomic Locations for LINC01077 Gene
Genomic Locations for LINC01077 Gene
- chr13:48,570,639-48,573,317
- (GRCh38/hg38)
- Size:
- 2,679 bases
- Orientation:
- Minus strand
Genomic View for LINC01077 Gene
Genes around LINC01077 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 13q14.2 by HGNC
- 13q14.2 by Entrez Gene
- 13q14.2 by Ensembl
LINC01077 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for LINC01077 Gene
Proteins for LINC01077 Gene
Post-translational modifications for LINC01077 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01077
- Origene Custom Protein Services for LINC01077
No data available for DME Specific Peptides for LINC01077 Gene
Domains & Families for LINC01077 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01077 Gene
Function for LINC01077 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for LINC01077
-
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01077 Gene
Localization for LINC01077 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01077 Gene
Transcripts for LINC01077 Gene
mRNA/cDNA for LINC01077 Gene
- (1) Additional mRNA sequences :
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000452288 413 bps (ENST00000452288.1)
- (1) RNA Central transcripts :
CRISPR Products
- Browse CRISPR knockouts for LINC01077
miRNA Products
Inhibitory RNA Products
Clone Products
Expression for LINC01077 Gene
NURSA nuclear receptor signaling pathways regulating expression of LINC01077 Gene:
LINC01077
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01077 Gene
Orthologs for LINC01077 Gene
No data available for Orthologs for LINC01077 Gene
Paralogs for LINC01077 Gene
No data available for Paralogs for LINC01077 Gene
Variants for LINC01077 Gene
Additional Variant Information for LINC01077 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01077
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01077 Gene
Disorders for LINC01077 Gene
No disorders were found for LINC01077 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01077 Gene
Publications for LINC01077 Gene
No publications were found for LINC01077 Gene.
No data available for External Links for LINC01077 Gene
Products for LINC01077 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01077
- Origene Custom Protein Services for LINC01077
- Browse OriGene Inhibitory RNA Products For LINC01077
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01077
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01077
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for LINC01077
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01077
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01077
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01077
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01077
Sources for LINC01077 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind