LINC01077 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1077

GC13M048570
GIFtS:
9
See more...

Aliases for LINC01077 Gene

Subcategory (RNA class) for LINC01077 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01077 Gene

  • Long Intergenic Non-Protein Coding RNA 1077 2 3 5
  • LINC01077 2 5 165
  • NONHSAG013484.2 91
  • HSALNG0097003 164

External Ids for LINC01077 Gene

Previous GeneCards Identifiers for LINC01077 Gene

  • GC13M049146
  • GC00U935318

Summaries for LINC01077 Gene

GeneCards Summary for LINC01077 Gene

LINC01077 (Long Intergenic Non-Protein Coding RNA 1077) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01077 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01077 Gene

Genomics for LINC01077 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01077 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH13J048574 Enhancer 0.4 FANTOM5 dbSUPER 600.7 -0.9 -944 0.1 LINC01077 RB1 RCBTB2 FNDC3A LPAR6 CYSLTR2 piR-48759-079
GH13J048567 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +3.4 3356 5.9 SOX13 RCOR2 SP1 PKNOX1 CEBPA TCF7 FOXA2 YY1 ZKSCAN1 TEAD1 LOC105370201 lnc-RCBTB2-1 RB1 RCBTB2 LPAR6 RB1-DT FNDC3A LINC01077 MN297208 CYSLTR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01077 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01077 Gene

Genomic Locations for LINC01077 Gene
chr13:48,570,639-48,573,317
(GRCh38/hg38)
Size:
2,679 bases
Orientation:
Minus strand

Genomic View for LINC01077 Gene

Genes around LINC01077 on UCSC Golden Path with GeneCards custom track
LINC01077 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01077 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01077 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for LINC01077 Gene

Proteins for LINC01077 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01077 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01077 Gene

Domains & Families for LINC01077 Gene

Gene Families for LINC01077 Gene

HGNC:
genes like me logo Genes that share domains with LINC01077: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01077 Gene

Function for LINC01077 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01077 Gene

Localization for LINC01077 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01077 Gene

Pathways & Interactions for LINC01077 Gene

PathCards logo

SuperPathways for LINC01077 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01077 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01077 Gene

Drugs & Compounds for LINC01077 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01077 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01077 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002F0FB9_9606 lncRNA 413 5

HGNC: 49120,

Ensembl: ENST00000452288 (view in UCSC) ,

LncBook: HSALNT0201544,

LNCipedia: LINC01077:1,

NONCODE: NONHSAT033720.2,

LINC01077 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01077 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01077 Gene

No ASD Table

Relevant External Links for LINC01077 Gene

GeneLoc Exon Structure for
LINC01077

Expression for LINC01077 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01077 Gene

mRNA expression in normal human tissues for LINC01077 Gene
mRNA expression by GTEx for LINC01077 Gene
genes like me logo Genes that share expression patterns with LINC01077: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01077 Gene

Orthologs for LINC01077 Gene

Evolution for LINC01077 Gene

ENSEMBL:
Gene Tree for LINC01077 (if available)
TreeFam:
Gene Tree for LINC01077 (if available)

No data available for Orthologs for LINC01077 Gene

Paralogs for LINC01077 Gene

No data available for Paralogs for LINC01077 Gene

Variants for LINC01077 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional Variant Information for LINC01077 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01077

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01077 Gene

Disorders for LINC01077 Gene

No disorders were found for LINC01077 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01077 Gene

Publications for LINC01077 Gene

No publications were found for LINC01077 Gene.

No data available for Mastermind for LINC01077 Gene

Products for LINC01077 Gene

Sources for LINC01077 Gene