Aliases for LINC01029 Gene

Data sources for LINC01029 Gene:

Subcategory (RNA class) for LINC01029 Gene

lncRNA

Aliases for LINC01029 Gene

External Ids for LINC01029 Gene

Previous GeneCards Identifiers for LINC01029 Gene

  • GC18M075687

Summaries for LINC01029 Gene

GeneCards Summary for LINC01029 Gene

LINC01029 (Long Intergenic Non-Protein Coding RNA 1029) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01029 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01029 Gene

Genomics for LINC01029 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01029 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J077993 Promoter 1 EPDnew 250.7 0.0 -16 0.1 MNT SMAD5 MBD2 BHLHE40 REST GTF2E2 TAL1 TAF9B NKRF ZNF316 LINC01029 lnc-MBP-14 GALR1 SALL3
GH18J078006 Enhancer 0.8 UCNEbase Ensembl ENCODE 0.4 -12.5 -12470 3.6 RNF2 RNU6-655P LINC01029 lnc-MBP-14 GALR1 SALL3
GH18J077985 Enhancer 0.5 UCNEbase 0.4 +8.0 7950 0.3 SUPT5H POLR2A ENSG00000264334 LOC105372218 LINC01029 GALR1 SALL3
GH18J077970 Enhancer 0.5 Ensembl ENCODE 0.3 +22.7 22730 1.2 SUPT5H POLR2A piR-48495 LINC01029 HSALNG0122662 GALR1
GH18J078003 Enhancer 0.4 Ensembl 0.4 -10.2 -10170 0.6 BMI1 POLR2A RNF2 USF1 RNU6-655P LINC01029 lnc-MBP-14 GALR1 SALL3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01029 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01029 Gene

Latest Assembly
chr18:77,970,637-77,993,731
(GRCh38/hg38)
Size:
23,095 bases
Orientation:
Minus strand

Previous Assembly
chr18:75,683,250-75,705,683
(GRCh37/hg19 by Entrez Gene)
Size:
22,434 bases
Orientation:
Minus strand

chr18:75,683,250-75,705,678
(GRCh37/hg19 by Ensembl)
Size:
22,429 bases
Orientation:
Minus strand

Genomic View for LINC01029 Gene

Genes around LINC01029 on UCSC Golden Path with GeneCards custom track
LINC01029 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01029 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01029 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01029 Gene

Proteins for LINC01029 Gene

Post-translational modifications for LINC01029 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01029 Gene

Domains & Families for LINC01029 Gene

Gene Families for LINC01029 Gene

genes like me logo Genes that share domains with LINC01029: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01029 Gene

Function for LINC01029 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01029 Gene

Localization for LINC01029 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01029 Gene

Pathways & Interactions for LINC01029 Gene

PathCards logo

SuperPathways for LINC01029 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01029 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01029 Gene

Drugs & Compounds for LINC01029 Gene

No Compound Related Data Available

Transcripts for LINC01029 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01029 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000364CA3_9606 lncRNA 1468 4

Ensembl: ENST00000583106 (view in UCSC) ,

LncBook: HSALNT0253596,

LNCipedia: LINC01029:6,

NONCODE: NONHSAT059996.2,

URS000012F598_9606 lncRNA 1250 4

Ensembl: ENST00000577408 (view in UCSC) ,

LncBook: HSALNT0253593,

LNCipedia: LINC01029:8,

NONCODE: NONHSAT059994.2,

URS0000605AE4_9606 lncRNA 788 4

Ensembl: ENST00000582805 (view in UCSC) ,

LncBook: HSALNT0253597,

LNCipedia: LINC01029:2,

NONCODE: NONHSAT059997.2,

URS000075B050_9606 lncRNA 1313 2

RefSeq: NR_104127,

LNCipedia: LINC01029:9,

URS0000EEFE52_9606 lncRNA 2052 1

Ensembl: ENST00000657337 (view in UCSC) ,

LINC01029 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01029 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01029 Gene

No ASD Table

Relevant External Links for LINC01029 Gene

GeneLoc Exon Structure for
LINC01029

Expression for LINC01029 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01029 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01029 Gene

This gene is overexpressed in Testis (x46.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01029

genes like me logo Genes that share expression patterns with LINC01029: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01029 Gene

Orthologs for LINC01029 Gene

Evolution for LINC01029 Gene

ENSEMBL:
Gene Tree for LINC01029 (if available)
TreeFam:
Gene Tree for LINC01029 (if available)

No data available for Orthologs for LINC01029 Gene

Paralogs for LINC01029 Gene

No data available for Paralogs for LINC01029 Gene

Variants for LINC01029 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01029 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01029 Gene

Variant ID Type Subtype PubMed ID
dgv3407n100 CNV gain 25217958
dgv471e201 CNV deletion 23290073
esv2717388 CNV deletion 23290073
esv3416024 CNV duplication 20981092
esv3643231 CNV loss 21293372
esv3643232 CNV gain 21293372
esv3643236 CNV loss 21293372
nsv1072820 CNV deletion 25765185

Additional Variant Information for LINC01029 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01029

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01029 Gene

Disorders for LINC01029 Gene

Additional Disease Information for LINC01029

No disorders were found for LINC01029 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01029 Gene

Publications for LINC01029 Gene

No publications were found for LINC01029 Gene.

Products for LINC01029 Gene

Sources for LINC01029 Gene