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Aliases for LINC01023 Gene

Subcategory (RNA class) for LINC01023 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01023 Gene

  • Long Intergenic Non-Protein Coding RNA 1023 2 3 5
  • CTC-329H14.4 3
  • HP07349 3

External Ids for LINC01023 Gene

Previous GeneCards Identifiers for LINC01023 Gene

  • GC05M108065

Summaries for LINC01023 Gene

GeneCards Summary for LINC01023 Gene

LINC01023 (Long Intergenic Non-Protein Coding RNA 1023) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01023 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01023 Gene

Genomics for LINC01023 Gene

GeneHancer (GH) Regulatory Elements for LINC01023 Gene

Promoters and enhancers for LINC01023 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I108726 Promoter/Enhancer 1.6 Ensembl ENCODE 550.8 +0.4 357 2.9 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 GC05M108725 LINC01023 LOC285638 FER GC05M108715
GH05I108729 Enhancer 0.5 ENCODE 550.8 -1.2 -1214 0.2 IRF9 ATF1 CEBPA DACH1 BACH1 CEBPB CEBPG GC05P108729 GC05M108725 LINC01023 FER
GH05I109406 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.3 -681.4 -681426 5.6 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC ZNF610 GLIS1 NBN NR2C1 PJA2 LOC285638 LINC01023 MAN2A1 GC05P109401
GH05I109468 Enhancer 1.2 Ensembl ENCODE 12.3 -740.6 -740554 0.4 PKNOX1 FOXA2 SMAD1 ARID4B SIN3A FEZF1 ZNF2 IRF4 ZNF766 ZNF213 LOC105379117 ENSG00000251367 FER LINC01023
GH05I108530 Enhancer 1 ENCODE 11.5 +196.9 196852 1.6 FOXA2 ARNT ZNF766 E2F8 REST ZNF592 MEF2D SMARCA4 NBN NR2C1 LOC285638 LINC01023 FER GC05P108543 LOC105379114
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01023 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01023 Gene

Genomic Locations for LINC01023 Gene
chr5:108,727,825-108,728,261
(GRCh38/hg38)
Size:
437 bases
Orientation:
Minus strand
chr5:108,063,524-108,064,130
(GRCh37/hg19)

Genomic View for LINC01023 Gene

Genes around LINC01023 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01023 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01023 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01023 Gene

Proteins for LINC01023 Gene

Post-translational modifications for LINC01023 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01023 Gene

Domains & Families for LINC01023 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01023 Gene

Function for LINC01023 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01023 Gene

Localization for LINC01023 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01023 Gene

Pathways & Interactions for LINC01023 Gene

SuperPathways for LINC01023 Gene

No Data Available

Interacting Proteins for LINC01023 Gene

Gene Ontology (GO) - Biological Process for LINC01023 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01023 Gene

Drugs & Compounds for LINC01023 Gene

No Compound Related Data Available

Transcripts for LINC01023 Gene

mRNA/cDNA for LINC01023 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01023 Gene

No ASD Table

Relevant External Links for LINC01023 Gene

GeneLoc Exon Structure for
LINC01023
ECgene alternative splicing isoforms for
LINC01023

Expression for LINC01023 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01023 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01023 Gene:

LINC01023
genes like me logo Genes that share expression patterns with LINC01023: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01023 Gene

Orthologs for LINC01023 Gene

Evolution for LINC01023 Gene

ENSEMBL:
Gene Tree for LINC01023 (if available)
TreeFam:
Gene Tree for LINC01023 (if available)

No data available for Orthologs for LINC01023 Gene

Paralogs for LINC01023 Gene

No data available for Paralogs for LINC01023 Gene

Variants for LINC01023 Gene

Sequence variations from dbSNP and Humsavar for LINC01023 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000458305 -- 108,728,105(-) G/A/C non_coding_transcript_variant
rs1002345610 -- 108,728,108(-) A/T non_coding_transcript_variant
rs1002404830 -- 108,729,144(-) T/C upstream_transcript_variant
rs1002806546 -- 108,728,293(-) G/A upstream_transcript_variant
rs1003407206 -- 108,729,662(-) T/A upstream_transcript_variant

Additional Variant Information for LINC01023 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01023

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01023 Gene

Disorders for LINC01023 Gene

Additional Disease Information for LINC01023

No disorders were found for LINC01023 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01023 Gene

Publications for LINC01023 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01023 Gene

Sources for LINC01023 Gene

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