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Aliases for LINC01018 Gene

Subcategory (RNA class) for LINC01018 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01018 Gene

  • Long Intergenic Non-Protein Coding RNA 1018 2 3 5
  • CTD-2195M18.1 3
  • SRHC 3

External Ids for LINC01018 Gene

Summaries for LINC01018 Gene

GeneCards Summary for LINC01018 Gene

LINC01018 (Long Intergenic Non-Protein Coding RNA 1018) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01018 include Hepatocellular Carcinoma.

Additional gene information for LINC01018 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01018 Gene

Genomics for LINC01018 Gene

GeneHancer (GH) Regulatory Elements for LINC01018 Gene

Promoters and enhancers for LINC01018 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J006583 Promoter/Enhancer 1 Ensembl ENCODE 658.8 +1.1 1065 0.4 CTCF L3MBTL2 SUZ12 VEZF1 NRF1 BACH1 YY1 LINC01018 UBE2QL1 NSUN2 SRD5A1
GH05J006631 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 13.2 +53.0 53001 7.9 HDGF CLOCK SMAD1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B NSUN2 SRD5A1 LINC02102 LINC02145 TENT4A LINC01018 MED10 GC05M006647
GH05J006659 Enhancer 0.7 ENCODE 13.1 +78.4 78405 1.4 PKNOX1 FOXA2 MAX EBF1 KLF5 RAD21 YY1 EGR1 ZSCAN5C HNF4G SRD5A1 LINC01018 GC05P006675 GC05M006647
GH05J006592 Enhancer 0.6 FANTOM5 0.4 +10.7 10658 0.2 SP1 ATF3 RXRA HLF MAX CEBPB HNF4A RAD21 NSUN2 SRD5A1 TENT4A LINC01018
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01018 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01018 Gene

Genomic Locations for LINC01018 Gene
chr5:6,582,136-6,588,500
(GRCh38/hg38)
Size:
6,365 bases
Orientation:
Plus strand
chr5:6,582,249-6,588,613
(GRCh37/hg19)
Size:
6,365 bases
Orientation:
Plus strand

Genomic View for LINC01018 Gene

Genes around LINC01018 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01018 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01018 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01018 Gene

Proteins for LINC01018 Gene

Post-translational modifications for LINC01018 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01018 Gene

Domains & Families for LINC01018 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01018 Gene

Function for LINC01018 Gene

Phenotypes From GWAS Catalog for LINC01018 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01018 Gene

Localization for LINC01018 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01018 Gene

Pathways & Interactions for LINC01018 Gene

SuperPathways for LINC01018 Gene

No Data Available

Interacting Proteins for LINC01018 Gene

Gene Ontology (GO) - Biological Process for LINC01018 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01018 Gene

Drugs & Compounds for LINC01018 Gene

No Compound Related Data Available

Transcripts for LINC01018 Gene

mRNA/cDNA for LINC01018 Gene

(11) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(6) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01018 Gene

No ASD Table

Relevant External Links for LINC01018 Gene

GeneLoc Exon Structure for
LINC01018
ECgene alternative splicing isoforms for
LINC01018

Expression for LINC01018 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01018 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01018 Gene

This gene is overexpressed in Liver (x18.2).

NURSA nuclear receptor signaling pathways regulating expression of LINC01018 Gene:

LINC01018
genes like me logo Genes that share expression patterns with LINC01018: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01018 Gene

Orthologs for LINC01018 Gene

Evolution for LINC01018 Gene

ENSEMBL:
Gene Tree for LINC01018 (if available)
TreeFam:
Gene Tree for LINC01018 (if available)

No data available for Orthologs for LINC01018 Gene

Paralogs for LINC01018 Gene

No data available for Paralogs for LINC01018 Gene

Variants for LINC01018 Gene

Sequence variations from dbSNP and Humsavar for LINC01018 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000490569 -- 6,581,395(+) G/A upstream_transcript_variant
rs1000604446 -- 6,581,178(+) G/A upstream_transcript_variant
rs1000871816 -- 6,580,917(+) T/C upstream_transcript_variant
rs1000956121 -- 6,586,149(+) C/T intron_variant
rs1001387722 -- 6,580,638(+) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01018 Gene

Variant ID Type Subtype PubMed ID
esv3894117 CNV gain 25118596

Additional Variant Information for LINC01018 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01018

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01018 Gene

Disorders for LINC01018 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01018 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01018

genes like me logo Genes that share disorders with LINC01018: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01018 Gene

Publications for LINC01018 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Epigenetically silenced long noncoding-SRHC promotes proliferation of hepatocellular carcinoma. (PMID: 25512078) Zheng H … Zhou WP (Journal of cancer research and clinical oncology 2015) 3 58
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01018 Gene

Sources for LINC01018 Gene

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