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Aliases for LINC01016 Gene

Subcategory (RNA class) for LINC01016 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01016 Gene

  • Long Intergenic Non-Protein Coding RNA 1016 2 3 5

External Ids for LINC01016 Gene

Previous GeneCards Identifiers for LINC01016 Gene

  • GC06M035242
  • GC06M035739
  • GC06M034551
  • GC06M035574
  • GC06M036316
  • GC06M036685
  • GC06M037040
  • GC06M037393
  • GC06M037750
  • GC06M038097

Summaries for LINC01016 Gene

GeneCards Summary for LINC01016 Gene

LINC01016 (Long Intergenic Non-Protein Coding RNA 1016) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01016 include Breast Cancer.

Additional gene information for LINC01016 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01016 Gene

Genomics for LINC01016 Gene

GeneHancer (GH) Regulatory Elements for LINC01016 Gene

Promoters and enhancers for LINC01016 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J033897 Enhancer 0.5 ENCODE 650.7 -0.6 -569 0.7 NCOA3 ZNF217 ZNF316 FOXA1 GC06P042445 GC06P042451 GC06P042511 GC06P042530 GC06P042554 GC06P042568 GC06P042569 GC06P042580 GC06P042593 GC06P042597
GH06J033895 Enhancer 0.2 ENCODE 650.7 +1.4 1435 0.2 GC06P042433 GC06P042437 GC06P042450 GC06P042475 GC06P042476 GC06P042477 GC06P042478 GC06P042488 GC06P042497 GC06P042509
GH06J033885 Enhancer 0.6 ENCODE 0.4 +11.6 11605 0.2 FOSL1 JUND SMARCC1 JUN SMARCC2 FOSL2 FOS EP300 GC06M038551 GC06M038589 GC06M038703 GC06M038705 GC06M038713 GC06M038831 GC06M038885 GC06M038903 GC06M038934 GC06M038938
GH06J033886 Enhancer 0.6 ENCODE 0.4 +10.5 10542 1.8 MEIS2 PKNOX1 SMARCC1 JUN FEZF1 EP300 FOSL1 JUND ZNF316 GLIS2 GC06M038713 GC06M038816 GC06M038817 GC06M038876 GC06M038885 GC06M038900 GC06M038903 GC06M038932 GC06M038934 GC06M038938
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01016 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01016 Gene

Genomic Locations for LINC01016 Gene
29,409 bases
Minus strand
29,409 bases
Minus strand

Genomic View for LINC01016 Gene

Genes around LINC01016 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01016 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01016 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01016 Gene

Proteins for LINC01016 Gene

Post-translational modifications for LINC01016 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01016 Gene

Domains & Families for LINC01016 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01016 Gene

Function for LINC01016 Gene

Phenotypes From GWAS Catalog for LINC01016 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01016 Gene

Localization for LINC01016 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01016 Gene

Pathways & Interactions for LINC01016 Gene

SuperPathways for LINC01016 Gene

No Data Available

Interacting Proteins for LINC01016 Gene

Gene Ontology (GO) - Biological Process for LINC01016 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01016 Gene

Drugs & Compounds for LINC01016 Gene

No Compound Related Data Available

Transcripts for LINC01016 Gene

mRNA/cDNA for LINC01016 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(6) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01016 Gene

No ASD Table

Relevant External Links for LINC01016 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01016 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01016 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01016 Gene

This gene is overexpressed in Testis (x31.1), Uterus (x7.0), Cervix - Endocervix (x5.5), and Cervix - Ectocervix (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of LINC01016 Gene:

genes like me logo Genes that share expression patterns with LINC01016: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01016 Gene

Orthologs for LINC01016 Gene

Evolution for LINC01016 Gene

Gene Tree for LINC01016 (if available)
Gene Tree for LINC01016 (if available)

No data available for Orthologs for LINC01016 Gene

Paralogs for LINC01016 Gene

No data available for Paralogs for LINC01016 Gene

Variants for LINC01016 Gene

Sequence variations from dbSNP and Humsavar for LINC01016 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000276794 -- 33,898,450(-) G/T upstream_transcript_variant
rs1000632677 -- 33,898,259(-) T/G upstream_transcript_variant
rs1000783037 -- 33,894,601(-) TCATT/TCATTCATT intron_variant
rs1000942948 -- 33,894,347(-) C/A intron_variant
rs1001284773 -- 33,897,617(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01016 Gene

Variant ID Type Subtype PubMed ID
esv3608630 CNV gain 21293372
esv3438821 CNV insertion 20981092
esv3308654 CNV mobile element insertion 20981092

Additional Variant Information for LINC01016 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01016 Gene

Disorders for LINC01016 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01016 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01016

genes like me logo Genes that share disorders with LINC01016: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01016 Gene

Publications for LINC01016 Gene

  1. Primate-specific oestrogen-responsive long non-coding RNAs regulate proliferation and viability of human breast cancer cells. (PMID: 28003470) Lin CY … Lipovich L (Open biology 2016) 2 3 58
  2. Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer. (PMID: 26426411) Jonsson P … Williams C (Molecular endocrinology (Baltimore, Md.) 2015) 2 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01016 Gene

Sources for LINC01016 Gene

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