Aliases for LINC01016 Gene

Data sources for LINC01016 Gene:

RNA type for LINC01016 Gene

lncRNA

Aliases for LINC01016 Gene

External Ids for LINC01016 Gene

Previous GeneCards Identifiers for LINC01016 Gene

  • GC06M035242
  • GC06M035739
  • GC06M034551
  • GC06M035574
  • GC06M038988
  • GC06M039810
  • GC06M040095
  • GC06M041412
  • GC06M036316
  • GC06M036685
  • GC06M037040
  • GC06M037393
  • GC06M037750
  • GC06M038097
  • GC06M038490
  • GC06M038833
  • GC06M042348
  • GC06M043858

Summaries for LINC01016 Gene

GeneCards Summary for LINC01016 Gene

LINC01016 (Long Intergenic Non-Protein Coding RNA 1016) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01016 include Breast Cancer.

Additional gene information for LINC01016 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01016 Gene

Genomics for LINC01016 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01016 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01016 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01016 Gene

Latest Assembly
chr6:33,867,505-33,897,380
(GRCh38/hg38)
Size:
29,876 bases
Orientation:
Minus strand

Previous Assembly
chr6:33,857,288-33,864,684
(GRCh37/hg19 by Entrez Gene)
Size:
7,397 bases
Orientation:
Minus strand

chr6:33,835,283-33,864,691
(GRCh37/hg19 by Ensembl)
Size:
29,409 bases
Orientation:
Minus strand

Genomic View for LINC01016 Gene

Genes around LINC01016 on UCSC Golden Path with GeneCards custom track
LINC01016 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01016 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01016 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01016 Gene

Proteins for LINC01016 Gene

Post-translational modifications for LINC01016 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01016 Gene

Domains & Families for LINC01016 Gene

Gene Families for LINC01016 Gene

genes like me logo Genes that share domains with LINC01016: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01016 Gene

Function for LINC01016 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01016 Gene

Localization for LINC01016 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01016 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01016 Gene

Pathways & Interactions for LINC01016 Gene

PathCards logo

SuperPathways for LINC01016 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01016 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01016 Gene

Drugs & Compounds for LINC01016 Gene

No Compound Related Data Available

Transcripts for LINC01016 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01016 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000055F02B_9606 lncRNA 396 4

Ensembl: ENST00000525912 (view in UCSC) ,

LncBook: HSALNT0105269,

LNCipedia: LINC01016:6,

NONCODE: NONHSAT109014.2,

URS00001399C6_9606 lncRNA 3151 3

Ensembl: ENST00000506222 (view in UCSC) ,

LNCipedia: LINC01016:3,

NONCODE: NONHSAT109849.2,

URS000028E8A1_9606 lncRNA 824 2

Ensembl: ENST00000531046 (view in UCSC) ,

LNCipedia: LINC01016:8,

URS00004F6340_9606 lncRNA 712 2

Ensembl: ENST00000525746 (view in UCSC) ,

LNCipedia: LINC01016:9,

URS0000EF2C76_9606 lncRNA 4012 1

Ensembl: ENST00000671143 (view in UCSC) ,

LINC01016 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01016 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01016 Gene

No ASD Table

Relevant External Links for LINC01016 Gene

GeneLoc Exon Structure for
LINC01016

Expression for LINC01016 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01016 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01016 Gene

This gene is overexpressed in Testis (x31.1), Uterus (x7.0), Cervix - Endocervix (x5.5), and Cervix - Ectocervix (x4.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01016

genes like me logo Genes that share expression patterns with LINC01016: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01016 Gene

Orthologs for LINC01016 Gene

Evolution for LINC01016 Gene

ENSEMBL:
Gene Tree for LINC01016 (if available)
TreeFam:
Gene Tree for LINC01016 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01016

No data available for Orthologs for LINC01016 Gene

Paralogs for LINC01016 Gene

No data available for Paralogs for LINC01016 Gene

Variants for LINC01016 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01016 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01016 Gene

Variant ID Type Subtype PubMed ID
esv3308654 CNV mobile element insertion 20981092
esv3438821 CNV insertion 20981092
esv3608630 CNV gain 21293372

Additional Variant Information for LINC01016 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01016
Leiden Open Variation Database (LOVD)
LINC01016

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01016 Gene

Disorders for LINC01016 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01016 Gene - From: LNC and COP

Disorder Aliases PubMed IDs
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01016

genes like me logo Genes that share disorders with LINC01016: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01016 Gene

Publications for LINC01016 Gene

  1. Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer. (PMID: 26426411) Jonsson P … Williams C (Molecular endocrinology (Baltimore, Md.) 2015) 2 3 72
  2. Primate-specific oestrogen-responsive long non-coding RNAs regulate proliferation and viability of human breast cancer cells. (PMID: 28003470) Lin CY … Lipovich L (Open biology 2016) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01016 Gene

Sources for LINC01016 Gene