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Aliases for LINC01015 Gene
Subcategory (RNA class) for LINC01015 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC01015 Gene
External Ids for LINC01015 Gene
- HGNC: 48988
- Entrez Gene: 100507362
- Ensembl: ENSG00000224582
Additional External Ids for LINC01015 Gene
Previous GeneCards Identifiers for LINC01015 Gene
- GC06P030028
- GC06P030195
- GC06P029809
- GC06P030148
- GC06P032349
- GC06P032539
- GC06P032696
- GC06P033516
- GC06P030379
- GC06P030536
- GC06P030770
- GC06P030919
- GC06P031081
- GC06P031238
- GC06P031443
- GC06P032100
Summaries for LINC01015 Gene
GeneCards Summary for LINC01015 Gene
LINC01015 (Long Intergenic Non-Protein Coding RNA 1015) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01015 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01015 Gene
Genomics for LINC01015 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01015 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH06J029490 | Enhancer | 0.9 | Ensembl ENCODE | 10.2 | -38.0 | -37962 | 0.5 | IKZF1 JUND MTA1 HDAC1 SOX6 TCF12 EP300 ZNF766 CTBP1 HES1 | RPS17P1 lnc-MAS1L-2 OR5V1 LINC01015 OR2H2 MAS1L LINC02829 UBD | |
| GH06J029553 | Enhancer | 0.8 | ENCODE | 10.8 | +25.0 | 24988 | 0.2 | TEAD4 KDM1A ZNF692 ZIC2 RBFOX2 PATZ1 ZNF501 EZH2 SCRT2 CTCF | ZFP57 LINC01015 ENSG00000237669 OR2I1P UBD MAS1L | |
| GH06J029477 | Enhancer | 0.5 | FANTOM5 | 10.3 | -50.6 | -50623 | 0.6 | FOXJ2 E2F5 VEZF1 USF2 | lnc-MAS1L-1 MAS1L OR12D3 OR5V1 UBD LINC01015 OR2H2 OR14J1 MAS1LP1 OR2H1 | |
| GH06J029523 | Enhancer | 0.4 | Ensembl | 0.7 | -3.5 | -3520 | 1.2 | FOXA2 YY1 CEBPG CEBPB | OR2H2 HLA-J IFITM4P HLA-K ENSG00000237669 HLA-A ZDHHC20P1 LINC01015 piR-37170-058 UBD |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01015 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01015 Gene
Genomic Locations for LINC01015 Gene
- chr6:29,528,721-29,533,665
- (GRCh38/hg38)
- Size:
- 4,945 bases
- Orientation:
- Plus strand
- chr6:29,497,183-29,501,345
- (GRCh37/hg19)
- Size:
- 4,163 bases
- Orientation:
- Plus strand
Genomic View for LINC01015 Gene
Genes around LINC01015 on UCSC Golden Path with GeneCards custom track
LINC01015 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 6p22.1 by HGNC
- 6p22.1 by Entrez Gene
- 6p22.1 by Ensembl
LINC01015 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01015 Gene
Proteins for LINC01015 Gene
Post-translational modifications for LINC01015 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01015
- Origene Custom Protein Services for LINC01015
No data available for DME Specific Peptides for LINC01015 Gene
Domains & Families for LINC01015 Gene
Gene Families for LINC01015 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01015 Gene
Function for LINC01015 Gene
Phenotypes From GWAS Catalog for LINC01015 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC01015
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01015 Gene
Localization for LINC01015 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01015 Gene
Transcripts for LINC01015 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01015 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000811ACB_9606 | lncRNA | 2874 | 3 |
Ensembl: ENST00000434657 (view in UCSC) , LncBook: HSALNT0103559, LNCipedia: LINC01015:5, |
| URS000075CB7B_9606 | lncRNA | 2791 | 2 |
HGNC: 48988, RefSeq: NR_037179, |
| URS00002282C4_9606 | lncRNA | 2777 | 2 |
Ensembl: ENST00000448853 (view in UCSC) , LNCipedia: LINC01015:4, |
| URS000031F8F6_9606 | lncRNA | 399 | 2 |
Ensembl: ENST00000418452 (view in UCSC) , ENST00000425928 (view in UCSC) , ENST00000445296 (view in UCSC) , ENST00000445541 (view in UCSC) , ENST00000453280 (view in UCSC) , LNCipedia: LINC01015:6, |
| URS0000DB87BA_9606 | lncRNA | 4118 | 1 |
Ensembl: ENST00000647732 (view in UCSC) , |
LINC01015 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01015 Gene
- 5 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC01015
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC01015 Gene
- GeneLoc Exon Structure for
- LINC01015
Expression for LINC01015 Gene
mRNA differential expression in normal tissues according to GTEx for LINC01015 Gene
This gene is overexpressed in Testis (x52.8).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01015
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01015 Gene
Orthologs for LINC01015 Gene
No data available for Orthologs for LINC01015 Gene
Paralogs for LINC01015 Gene
No data available for Paralogs for LINC01015 Gene
Variants for LINC01015 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2759411 | CNV | gain+loss | 17122850 |
| nsv1074389 | CNV | deletion | 25765185 |
| nsv10807 | CNV | loss | 18304495 |
| nsv1122126 | CNV | deletion | 24896259 |
| nsv1145096 | CNV | deletion | 24896259 |
| nsv601228 | CNV | loss | 21841781 |
Additional Variant Information for LINC01015 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01015
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01015 Gene
Disorders for LINC01015 Gene
Additional Disease Information for LINC01015
No disorders were found for LINC01015 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01015 Gene
Publications for LINC01015 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
Products for LINC01015 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01015
- Origene Custom Protein Services for LINC01015
- Browse OriGene Inhibitory RNA Products For LINC01015
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01015
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01015
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01015
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01015
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01015
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01015
Sources for LINC01015 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB