Aliases for LINC01015 Gene

Subcategory (RNA class) for LINC01015 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01015 Gene

  • Long Intergenic Non-Protein Coding RNA 1015 2 3 5
  • LINC01015 2 170
  • NONHSAG043358 94
  • HSALNG0049066 169
  • NONHSAG046357 94
  • NONHSAG045836 94
  • NONHSAG046184 94
  • NONHSAG045544 94
  • NONHSAG045645 94
  • NONHSAG046023 94
  • NONHSAG046543 94
  • DAQB-12N14.5 3

External Ids for LINC01015 Gene

Previous GeneCards Identifiers for LINC01015 Gene

  • GC06P030028
  • GC06P030195
  • GC06P029809
  • GC06P030148
  • GC06P032349
  • GC06P032539
  • GC06P030379
  • GC06P030536
  • GC06P030770
  • GC06P030919
  • GC06P031081
  • GC06P031238
  • GC06P031443
  • GC06P032100

Summaries for LINC01015 Gene

GeneCards Summary for LINC01015 Gene

LINC01015 (Long Intergenic Non-Protein Coding RNA 1015) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01015 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01015 Gene

Genomics for LINC01015 Gene

GeneHancer (GH) Regulatory Elements for LINC01015 Gene

Promoters and enhancers for LINC01015 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01015 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01015 Gene

Genomic Locations for LINC01015 Gene
chr6:29,528,721-29,533,665
(GRCh38/hg38)
Size:
4,945 bases
Orientation:
Plus strand
chr6:29,497,183-29,501,345
(GRCh37/hg19)
Size:
4,163 bases
Orientation:
Plus strand

Genomic View for LINC01015 Gene

Genes around LINC01015 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01015 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01015 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for LINC01015 Gene

Post-translational modifications for LINC01015 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01015 Gene

Domains & Families for LINC01015 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01015 Gene

Function for LINC01015 Gene

Phenotypes From GWAS Catalog for LINC01015 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01015 Gene

Localization for LINC01015 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01015 Gene

Pathways & Interactions for LINC01015 Gene

PathCards logo

SuperPathways for LINC01015 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01015 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01015 Gene

Drugs & Compounds for LINC01015 Gene

No Compound Related Data Available

Transcripts for LINC01015 Gene

mRNA/cDNA for LINC01015 Gene

(3) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(24) RNACentral transcripts :
(22) LncBook transcripts :
(26) NONCODE transcripts :
(7) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01015 Gene

No ASD Table

Relevant External Links for LINC01015 Gene

GeneLoc Exon Structure for
LINC01015
ECgene alternative splicing isoforms for
LINC01015

Expression for LINC01015 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01015 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01015 Gene

This gene is overexpressed in Testis (x52.8).

NURSA nuclear receptor signaling pathways regulating expression of LINC01015 Gene:

LINC01015
genes like me logo Genes that share expression patterns with LINC01015: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01015 Gene

Orthologs for LINC01015 Gene

Evolution for LINC01015 Gene

ENSEMBL:
Gene Tree for LINC01015 (if available)
TreeFam:
Gene Tree for LINC01015 (if available)

No data available for Orthologs for LINC01015 Gene

Paralogs for LINC01015 Gene

No data available for Paralogs for LINC01015 Gene

Variants for LINC01015 Gene

Sequence variations from dbSNP and Humsavar for LINC01015 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000440576 -- 29,533,276(+) C/A non_coding_transcript_variant
rs1000920653 -- 29,528,172(+) T/A/C upstream_transcript_variant
rs1001035068 -- 29,529,663(+) T/C intron_variant
rs1001591795 -- 29,533,220(+) A/G non_coding_transcript_variant
rs1001592997 -- 29,530,984(+) C/A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01015 Gene

Variant ID Type Subtype PubMed ID
esv2759411 CNV gain+loss 17122850
nsv1074389 CNV deletion 25765185
nsv10807 CNV loss 18304495
nsv1122126 CNV deletion 24896259
nsv1145096 CNV deletion 24896259
nsv601228 CNV loss 21841781

Additional Variant Information for LINC01015 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01015

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01015 Gene

Disorders for LINC01015 Gene

Additional Disease Information for LINC01015

No disorders were found for LINC01015 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01015 Gene

Publications for LINC01015 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 56
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for LINC01015 Gene

Sources for LINC01015 Gene