Aliases for LINC01015 Gene

Subcategory (RNA class) for LINC01015 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01015 Gene

  • Long Intergenic Non-Protein Coding RNA 1015 2 3 5
  • LINC01015 2 5 165
  • NONHSAG046543.2 91
  • NONHSAG046357.2 91
  • NONHSAG046023.2 91
  • NONHSAG043358.2 91
  • NONHSAG045645.2 91
  • NONHSAG045544.2 91
  • NONHSAG045836.2 91
  • NONHSAG046184.2 91
  • HSALNG0049066 164
  • DAQB-12N14.5 3

External Ids for LINC01015 Gene

Previous GeneCards Identifiers for LINC01015 Gene

  • GC06P030028
  • GC06P030195
  • GC06P029809
  • GC06P030148
  • GC06P032349
  • GC06P032539
  • GC06P032696
  • GC06P033516
  • GC06P030379
  • GC06P030536
  • GC06P030770
  • GC06P030919
  • GC06P031081
  • GC06P031238
  • GC06P031443
  • GC06P032100

Summaries for LINC01015 Gene

GeneCards Summary for LINC01015 Gene

LINC01015 (Long Intergenic Non-Protein Coding RNA 1015) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01015 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01015 Gene

Genomics for LINC01015 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01015 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J029490 Enhancer 0.9 Ensembl ENCODE 10.2 -38.0 -37962 0.5 IKZF1 JUND MTA1 HDAC1 SOX6 TCF12 EP300 ZNF766 CTBP1 HES1 RPS17P1 lnc-MAS1L-2 OR5V1 LINC01015 OR2H2 MAS1L LINC02829 UBD
GH06J029553 Enhancer 0.8 ENCODE 10.8 +25.0 24988 0.2 TEAD4 KDM1A ZNF692 ZIC2 RBFOX2 PATZ1 ZNF501 EZH2 SCRT2 CTCF ZFP57 LINC01015 ENSG00000237669 OR2I1P UBD MAS1L
GH06J029477 Enhancer 0.5 FANTOM5 10.3 -50.6 -50623 0.6 FOXJ2 E2F5 VEZF1 USF2 lnc-MAS1L-1 MAS1L OR12D3 OR5V1 UBD LINC01015 OR2H2 OR14J1 MAS1LP1 OR2H1
GH06J029523 Enhancer 0.4 Ensembl 0.7 -3.5 -3520 1.2 FOXA2 YY1 CEBPG CEBPB OR2H2 HLA-J IFITM4P HLA-K ENSG00000237669 HLA-A ZDHHC20P1 LINC01015 piR-37170-058 UBD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01015 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01015 Gene

Genomic Locations for LINC01015 Gene
chr6:29,528,721-29,533,665
(GRCh38/hg38)
Size:
4,945 bases
Orientation:
Plus strand
chr6:29,497,183-29,501,345
(GRCh37/hg19)
Size:
4,163 bases
Orientation:
Plus strand

Genomic View for LINC01015 Gene

Genes around LINC01015 on UCSC Golden Path with GeneCards custom track
LINC01015 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01015 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01015 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for LINC01015 Gene

Post-translational modifications for LINC01015 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01015 Gene

Domains & Families for LINC01015 Gene

Gene Families for LINC01015 Gene

genes like me logo Genes that share domains with LINC01015: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01015 Gene

Function for LINC01015 Gene

Phenotypes From GWAS Catalog for LINC01015 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01015 Gene

Localization for LINC01015 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01015 Gene

Pathways & Interactions for LINC01015 Gene

PathCards logo

SuperPathways for LINC01015 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01015 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01015 Gene

Drugs & Compounds for LINC01015 Gene

No Compound Related Data Available

Transcripts for LINC01015 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01015 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000811ACB_9606 lncRNA 2874 3

Ensembl: ENST00000434657 (view in UCSC) ,

LncBook: HSALNT0103559,

LNCipedia: LINC01015:5,

URS000075CB7B_9606 lncRNA 2791 2

HGNC: 48988,

RefSeq: NR_037179,

URS00002282C4_9606 lncRNA 2777 2

Ensembl: ENST00000448853 (view in UCSC) ,

LNCipedia: LINC01015:4,

URS000031F8F6_9606 lncRNA 399 2

Ensembl: ENST00000418452 (view in UCSC) , ENST00000425928 (view in UCSC) , ENST00000445296 (view in UCSC) , ENST00000445541 (view in UCSC) , ENST00000453280 (view in UCSC) ,

LNCipedia: LINC01015:6,

URS0000DB87BA_9606 lncRNA 4118 1

Ensembl: ENST00000647732 (view in UCSC) ,

LINC01015 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01015 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01015 Gene

No ASD Table

Relevant External Links for LINC01015 Gene

GeneLoc Exon Structure for
LINC01015

Expression for LINC01015 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01015 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01015 Gene

This gene is overexpressed in Testis (x52.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01015

genes like me logo Genes that share expression patterns with LINC01015: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01015 Gene

Orthologs for LINC01015 Gene

Evolution for LINC01015 Gene

ENSEMBL:
Gene Tree for LINC01015 (if available)
TreeFam:
Gene Tree for LINC01015 (if available)

No data available for Orthologs for LINC01015 Gene

Paralogs for LINC01015 Gene

No data available for Paralogs for LINC01015 Gene

Variants for LINC01015 Gene

Additional dbSNP identifiers (rs#s) for LINC01015 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01015 Gene

Variant ID Type Subtype PubMed ID
esv2759411 CNV gain+loss 17122850
nsv1074389 CNV deletion 25765185
nsv10807 CNV loss 18304495
nsv1122126 CNV deletion 24896259
nsv1145096 CNV deletion 24896259
nsv601228 CNV loss 21841781

Additional Variant Information for LINC01015 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01015

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01015 Gene

Disorders for LINC01015 Gene

No disorders were found for LINC01015 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01015 Gene

Publications for LINC01015 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01015 Gene

Sources for LINC01015 Gene