Aliases for LINC01012 Gene

Subcategory (RNA class) for LINC01012 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01012 Gene

  • Long Intergenic Non-Protein Coding RNA 1012 2 3 5
  • Lnc-HIST1H2AI-3 165
  • NONHSAG043289.2 91
  • HSALNG0048900 164
  • AL009179.1 5
  • LINC01012 2

External Ids for LINC01012 Gene

Previous GeneCards Identifiers for LINC01012 Gene

  • GC06P027663
  • GC06P027695
  • GC06P027749
  • GC06P028100

Summaries for LINC01012 Gene

GeneCards Summary for LINC01012 Gene

LINC01012 (Long Intergenic Non-Protein Coding RNA 1012) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01012 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01012 Gene

Genomics for LINC01012 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01012 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J027693 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 600.7 +0.2 166 2.8 CREB1 GATAD2A PRDM10 ZNF629 TFE3 ZNF512 IKZF1 KDM1A RCOR2 POLR2A LINC01012 ZKSCAN8 ZKSCAN3 ZNF391 ZNF603P ZSCAN9 RNU6-471P ZKSCAN4 ZNF204P ZSCAN12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01012 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01012 Gene

Genomic Locations for LINC01012 Gene
chr6:27,694,035-27,719,760
(GRCh38/hg38)
Size:
25,726 bases
Orientation:
Plus strand
chr6:27,661,814-27,678,001
(GRCh37/hg19)
Size:
16,188 bases
Orientation:
Plus strand

Genomic View for LINC01012 Gene

Genes around LINC01012 on UCSC Golden Path with GeneCards custom track
LINC01012 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01012 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01012 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01012 Gene

Proteins for LINC01012 Gene

Post-translational modifications for LINC01012 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01012 Gene

Domains & Families for LINC01012 Gene

Gene Families for LINC01012 Gene

genes like me logo Genes that share domains with LINC01012: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01012 Gene

Function for LINC01012 Gene

Phenotypes From GWAS Catalog for LINC01012 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01012 Gene

Localization for LINC01012 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01012 Gene

Pathways & Interactions for LINC01012 Gene

PathCards logo

SuperPathways for LINC01012 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01012 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01012 Gene

Drugs & Compounds for LINC01012 Gene

No Compound Related Data Available

Transcripts for LINC01012 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01012 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000811C89_9606 lncRNA 834 4

Ensembl: ENST00000625477 (view in UCSC) ,

LncBook: HSALNT0103147,

LNCipedia: lnc-HIST1H2AI-3:11,

NONCODE: NONHSAT207020.1,

URS000075B514_9606 lncRNA 753 4

RefSeq: NR_038294,

LncBook: HSALNT0103143,

LNCipedia: lnc-HIST1H2AI-3:7,

NONCODE: NONHSAT108395.2,

URS0000759BF8_9606 lncRNA 675 4

RefSeq: NR_038293,

LncBook: HSALNT0103145,

LNCipedia: lnc-HIST1H2AI-3:6,

NONCODE: NONHSAT108394.2,

URS0000811CEB_9606 lncRNA 2771 3

Ensembl: ENST00000629732 (view in UCSC) ,

LNCipedia: lnc-HIST1H2AI-3:9,

NONCODE: NONHSAT108398.2,

URS000075BAE5_9606 lncRNA 2771 2

HGNC: 48986,

RefSeq: NR_038292,

LINC01012 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01012 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01012 Gene

No ASD Table

Relevant External Links for LINC01012 Gene

GeneLoc Exon Structure for
LINC01012

Expression for LINC01012 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01012

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01012 Gene

Orthologs for LINC01012 Gene

Evolution for LINC01012 Gene

ENSEMBL:
Gene Tree for LINC01012 (if available)
TreeFam:
Gene Tree for LINC01012 (if available)

No data available for Orthologs for LINC01012 Gene

Paralogs for LINC01012 Gene

No data available for Paralogs for LINC01012 Gene

Variants for LINC01012 Gene

Additional dbSNP identifiers (rs#s) for LINC01012 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01012 Gene

Variant ID Type Subtype PubMed ID
esv25354 CNV loss 19812545
esv2673000 CNV deletion 23128226
esv3608433 CNV gain 21293372
esv3608437 CNV loss 21293372
esv3608438 CNV loss 21293372
nsv1023808 CNV loss 25217958
nsv437481 CNV loss 16327808
nsv437482 CNV loss 16327808
nsv437961 CNV loss 16468122
nsv518945 CNV gain 19592680
nsv601204 CNV loss 21841781
nsv601205 CNV gain 21841781
nsv601206 CNV loss 21841781
nsv830618 CNV gain 17160897

Additional Variant Information for LINC01012 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01012

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01012 Gene

Disorders for LINC01012 Gene

No disorders were found for LINC01012 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01012 Gene

Publications for LINC01012 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01012 Gene

Sources for LINC01012 Gene