Aliases for LINC01010 Gene

Subcategory (RNA class) for LINC01010 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01010 Gene

  • Long Intergenic Non-Protein Coding RNA 1010 2 3 5
  • LINC01010 2 168
  • NONHSAG044893 92
  • HSALNG0053627 167
  • HSALNG0053618 167

External Ids for LINC01010 Gene

Previous GeneCards Identifiers for LINC01010 Gene

  • GC06P134759
  • GC06P134437

Summaries for LINC01010 Gene

GeneCards Summary for LINC01010 Gene

LINC01010 (Long Intergenic Non-Protein Coding RNA 1010) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01010 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01010 Gene

Genomics for LINC01010 Gene

GeneHancer (GH) Regulatory Elements for LINC01010 Gene

Promoters and enhancers for LINC01010 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J134464 Enhancer 1.2 Ensembl ENCODE dbSUPER 20.9 +123.5 123494 6.4 ZSCAN5C ZNF639 ZNF10 ZIC2 MEF2C CUX1 EP300 ATF2 ZNF341 FOXA2 LINC01010 SGK1 RF01045-134 piR-35674-456 CT69
GH06J134435 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 11.4 +94.4 94438 4.9 CTCF GTF2E2 JUND FOS POLR2A AFF1 TRIM28 REST EP300 CTBP1 LINC01010 SGK1 RF00017-5785 piR-35674-456 CT69
GH06J134453 Enhancer 1 Ensembl ENCODE dbSUPER 13.7 +113.6 113594 6.6 ZNF217 TEAD4 REST CTBP1 NCOR1 SPI1 CTCF DPF2 RAD21 POLR2A LINC01010 SGK1 piR-35674-456 RF01045-134 CT69
GH06J134419 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 7.1 +80.4 80394 10.2 TCF12 JUND FOS EP300 REST ZNF662 SKI BCL11A CREB1 ZNF316 lnc-SGK1-5 SGK1 ENSG00000234084 LINC01010 RF00017-5785 CT69
GH06J134480 Enhancer 0.6 Ensembl ENCODE 18.6 +137.7 137693 0.8 FOS JUND SP1 RF01045-134 LINC01010 SGK1 piR-35674-456 CT69 lnc-SGK1-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01010 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01010 Gene

Genomic Locations for LINC01010 Gene
chr6:134,343,307-134,513,121
(GRCh38/hg38)
Size:
169,815 bases
Orientation:
Plus strand
chr6:134,758,854-134,825,719
(GRCh37/hg19)
Size:
66,866 bases
Orientation:
Plus strand

Genomic View for LINC01010 Gene

Genes around LINC01010 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01010 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01010 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01010 Gene

Proteins for LINC01010 Gene

Post-translational modifications for LINC01010 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01010 Gene

Domains & Families for LINC01010 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01010 Gene

Function for LINC01010 Gene

Phenotypes From GWAS Catalog for LINC01010 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01010 Gene

Localization for LINC01010 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01010 Gene

Pathways & Interactions for LINC01010 Gene

PathCards logo

SuperPathways for LINC01010 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01010 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01010 Gene

Drugs & Compounds for LINC01010 Gene

No Compound Related Data Available

Transcripts for LINC01010 Gene

mRNA/cDNA for LINC01010 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01010 Gene

No ASD Table

Relevant External Links for LINC01010 Gene

GeneLoc Exon Structure for
LINC01010

Expression for LINC01010 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01010 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01010 Gene

This gene is overexpressed in Testis (x18.0) and Liver (x8.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01010

genes like me logo Genes that share expression patterns with LINC01010: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01010 Gene

Orthologs for LINC01010 Gene

Evolution for LINC01010 Gene

ENSEMBL:
Gene Tree for LINC01010 (if available)
TreeFam:
Gene Tree for LINC01010 (if available)

No data available for Orthologs for LINC01010 Gene

Paralogs for LINC01010 Gene

No data available for Paralogs for LINC01010 Gene

Variants for LINC01010 Gene

Additional dbSNP identifiers (rs#s) for LINC01010 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01010 Gene

Variant ID Type Subtype PubMed ID
dgv3397n106 CNV deletion 24896259
esv1005098 CNV insertion 20482838
esv1057853 CNV insertion 17803354
esv1286346 CNV deletion 17803354
esv1714351 CNV deletion 17803354
esv1932955 CNV deletion 18987734
esv2617044 CNV deletion 19546169
esv2732735 CNV deletion 23290073
esv2732736 CNV deletion 23290073
esv2732737 CNV deletion 23290073
esv2761036 CNV loss 21179565
esv3540503 CNV deletion 23714750
esv3610880 CNV loss 21293372
esv3610881 CNV loss 21293372
esv4430 CNV loss 18987735
esv8543 CNV loss 19470904
nsv1153420 CNV deletion 26484159
nsv349515 CNV insertion 16902084
nsv508431 CNV deletion 20534489

Additional Variant Information for LINC01010 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01010

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01010 Gene

Disorders for LINC01010 Gene

Additional Disease Information for LINC01010

No disorders were found for LINC01010 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01010 Gene

Publications for LINC01010 Gene

  1. Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele. (PMID: 21768215) Tin A … CARe and CHARGE Consortia (Human molecular genetics 2011) 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC01010 Gene

Sources for LINC01010 Gene