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Aliases for LINC01003 Gene

Subcategory (RNA class) for LINC01003 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for LINC01003 Gene

  • Long Intergenic Non-Protein Coding RNA 1003 2 3 5

External Ids for LINC01003 Gene

ORGUL Members for LINC01003 Gene

Previous GeneCards Identifiers for LINC01003 Gene

  • GC07P152160

Summaries for LINC01003 Gene

GeneCards Summary for LINC01003 Gene

LINC01003 (Long Intergenic Non-Protein Coding RNA 1003) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01003 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01003 Gene

Genomics for LINC01003 Gene

GeneHancer (GH) Regulatory Elements for LINC01003 Gene

Promoters and enhancers for LINC01003 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J152462 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE 682.2 +0.2 207 3.5 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC ZNF610 GLIS1 NBN LINC01003 KMT2C XRCC2 ACTR3B GC07P152484
GH07J152432 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 25.3 -28.5 -28482 4.9 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 POLR2B KMT2C FABP5P3 LINC01003 ENSG00000212590 GC07P152429
GH07J152075 Enhancer 0.7 ENCODE 14.3 -387.0 -386994 2 CTCF CLOCK ZNF777 ZBTB6 FEZF1 ZIC2 RAD21 GATA3 FOXK2 SCRT2 LINC01003 ENSG00000229591 LOC105375570 GALNTL5 GC07P152092 PIR42090 GALNT11
GH07J151800 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5 -657.4 -657369 11 FOXA2 ARNT NFIB NFXL1 RAD21 RARA YY1 ZSCAN5C RCOR1 FOS LOC644090 PRKAG2 NUB1 ENSG00000244151 ENSG00000229591 TMUB1 LINC01003 GC07M151797
GH07J152024 Promoter/Enhancer 1.5 Ensembl ENCODE 4.7 -437.9 -437919 1.8 HDGF PKNOX1 CLOCK ARNT SIN3A DMAP1 ZNF2 POLR2B E2F8 FOS PIR42090 GALNT11 ENSG00000276213 NUB1 KMT2C ENSG00000244151 ENSG00000229591 CRYGN LINC01003
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01003 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01003 Gene

Genomic Locations for LINC01003 Gene
chr7:152,463,786-152,465,549
(GRCh38/hg38)
Size:
1,764 bases
Orientation:
Plus strand
chr7:152,160,871-152,162,634
(GRCh37/hg19)
Size:
1,764 bases
Orientation:
Plus strand

Genomic View for LINC01003 Gene

Genes around LINC01003 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01003 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01003 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01003 Gene

Proteins for LINC01003 Gene

Post-translational modifications for LINC01003 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01003 Gene

Domains & Families for LINC01003 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01003 Gene

Function for LINC01003 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01003 Gene

Localization for LINC01003 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01003 Gene

Pathways & Interactions for LINC01003 Gene

SuperPathways for LINC01003 Gene

No Data Available

Interacting Proteins for LINC01003 Gene

Gene Ontology (GO) - Biological Process for LINC01003 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01003 Gene

Drugs & Compounds for LINC01003 Gene

No Compound Related Data Available

Transcripts for LINC01003 Gene

mRNA/cDNA for LINC01003 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01003 Gene

No ASD Table

Relevant External Links for LINC01003 Gene

GeneLoc Exon Structure for
LINC01003
ECgene alternative splicing isoforms for
LINC01003

Expression for LINC01003 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01003 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01003 Gene:

LINC01003
genes like me logo Genes that share expression patterns with LINC01003: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01003 Gene

Orthologs for LINC01003 Gene

Evolution for LINC01003 Gene

ENSEMBL:
Gene Tree for LINC01003 (if available)
TreeFam:
Gene Tree for LINC01003 (if available)

No data available for Orthologs for LINC01003 Gene

Paralogs for LINC01003 Gene

No data available for Paralogs for LINC01003 Gene

Variants for LINC01003 Gene

Sequence variations from dbSNP and Humsavar for LINC01003 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000165749 -- 152,464,577(+) A/G non_coding_transcript_variant
rs1000300675 -- 152,465,178(+) A/T non_coding_transcript_variant
rs1001238186 -- 152,464,216(+) GCCGCCGGCCGCCGGCCGCCG/GCCGCCGGCCGCCG non_coding_transcript_variant
rs1001377888 -- 152,466,018(+) A/G downstream_transcript_variant
rs1001742321 -- 152,463,375(+) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01003 Gene

Variant ID Type Subtype PubMed ID
dgv11730n54 CNV loss 21841781
dgv1339e214 CNV gain 21293372
dgv3695n106 OTHER inversion 24896259
nsv1017565 CNV gain 25217958
nsv1017871 CNV gain 25217958
nsv1067934 OTHER inversion 25765185
nsv1151906 OTHER inversion 26484159
nsv609048 CNV gain 21841781
nsv609055 CNV gain 21841781

Additional Variant Information for LINC01003 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01003

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01003 Gene

Disorders for LINC01003 Gene

Additional Disease Information for LINC01003

No disorders were found for LINC01003 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01003 Gene

Publications for LINC01003 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LINC01003 Gene

Sources for LINC01003 Gene

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