Aliases for LINC00999 Gene

Subcategory (RNA class) for LINC00999 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00999 Gene

  • Long Intergenic Non-Protein Coding RNA 999 2 3
  • LINC00999 2 168
  • NONHSAG005654 92
  • HSALNG0077424 167

External Ids for LINC00999 Gene

Previous GeneCards Identifiers for LINC00999 Gene

  • GC10P038723
  • GC10P038428

Summaries for LINC00999 Gene

GeneCards Summary for LINC00999 Gene

LINC00999 (Long Intergenic Non-Protein Coding RNA 999) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00999 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00999 Gene

Genomics for LINC00999 Gene

GeneHancer (GH) Regulatory Elements for LINC00999 Gene

Promoters and enhancers for LINC00999 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J038401 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 504.9 -0.5 -488 3.4 ZBTB40 ZNF217 NRF1 POLR2G SP1 PHF8 ZFX CLOCK ZBTB11 ZBTB26 SEPTIN7P9 LINC00999 ENSG00000276805 LOC101929540 lnc-ZNF25-3 piR-60253-004 HSD17B7P2 ENSG00000272983 SLC9B1P3 ZNF25-DT
GH10J037865 Enhancer 0.7 Ensembl 4.1 -537.0 -536988 1.2 TRIM22 SRF ARNT NBN ELF1 IKZF1 STAT1 CEBPB ZNF217 BHLHE40 ZNF25 HSD17B7P2 LINC00999 ZNF248 ZNF37CP
GH10J038359 Enhancer 0.2 Ensembl 4.4 -43.4 -43388 0.8 HSD17B7P2 ENSG00000272983 LINC00999 NONHSAG003299.2-002 ENSG00000283930
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00999 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00999 Gene

Genomic Locations for LINC00999 Gene
chr10:38,403,189-38,452,153
(GRCh38/hg38)
Size:
48,965 bases
Orientation:
Plus strand
chr10:38,717,074-38,741,081
(GRCh37/hg19)
Size:
24,008 bases
Orientation:
Plus strand

Genomic View for LINC00999 Gene

Genes around LINC00999 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00999 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00999 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00999 Gene

Proteins for LINC00999 Gene

Post-translational modifications for LINC00999 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00999 Gene

Domains & Families for LINC00999 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00999 Gene

Function for LINC00999 Gene

Phenotypes From GWAS Catalog for LINC00999 Gene

Phenotypes for LINC00999 Gene

genes like me logo Genes that share phenotypes with LINC00999: view

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00999

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00999 Gene

Localization for LINC00999 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00999 Gene

Pathways & Interactions for LINC00999 Gene

PathCards logo

SuperPathways for LINC00999 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00999 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00999 Gene

Drugs & Compounds for LINC00999 Gene

No Compound Related Data Available

Transcripts for LINC00999 Gene

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00999

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00999 Gene

No ASD Table

Relevant External Links for LINC00999 Gene

GeneLoc Exon Structure for
LINC00999

Expression for LINC00999 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00999 Gene

This gene is overexpressed in Testis (x7.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00999

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00999 Gene

Orthologs for LINC00999 Gene

No data available for Orthologs and Evolution for LINC00999 Gene

Paralogs for LINC00999 Gene

genes like me logo Genes that share paralogs with LINC00999: view

No data available for Paralogs for LINC00999 Gene

Variants for LINC00999 Gene

Additional dbSNP identifiers (rs#s) for LINC00999 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00999 Gene

Variant ID Type Subtype PubMed ID
dgv10e203 CNV gain 21179565
dgv709n100 CNV gain 25217958
esv1007625 CNV loss 20482838
esv2735639 CNV deletion 23290073
esv2735650 CNV deletion 23290073
esv2759744 CNV gain+loss 17122850
esv29065 CNV gain+loss 19812545
esv3576438 CNV gain 25503493
nsv428230 CNV loss 18775914
nsv550420 CNV gain 21841781
nsv550421 CNV loss 21841781
nsv821215 CNV deletion 20802225
nsv947860 CNV duplication 23825009
nsv951542 CNV deletion 24416366

Variation tolerance for LINC00999 Gene

Gene Damage Index Score: 11.85; 93.48% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC00999 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00999

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC00999 Gene

Disorders for LINC00999 Gene

Additional Disease Information for LINC00999

No disorders were found for LINC00999 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00999 Gene

Publications for LINC00999 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 54

Products for LINC00999 Gene

Sources for LINC00999 Gene