Aliases for LINC00993 Gene

Subcategory (RNA class) for LINC00993 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00993 Gene

  • Long Intergenic Non-Protein Coding RNA 993 2 3 5
  • TCONS_l2_00002973 3
  • Lnc-ZNF33A-137 168
  • NONHSAG005629 92
  • HSALNG0077354 167
  • LINC00993 2

External Ids for LINC00993 Gene

Previous GeneCards Identifiers for LINC00993 Gene

  • GC10P037600
  • GC10P037309

Summaries for LINC00993 Gene

GeneCards Summary for LINC00993 Gene

LINC00993 (Long Intergenic Non-Protein Coding RNA 993) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00993 include Breast Cancer.

Additional gene information for LINC00993 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00993 Gene

Genomics for LINC00993 Gene

GeneHancer (GH) Regulatory Elements for LINC00993 Gene

Promoters and enhancers for LINC00993 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J037535 Enhancer 0.5 ENCODE 5.4 +287.9 287944 1.8 TCF12 MAFF SMARCA4 MAFK FOXA1 SOX13 SP1 ZNF25 HSD17B7P2 LINC00993 ZNF37A piR-38352-050 piR-48553-033 TACC1P1
GH10J037306 Enhancer 0.2 FANTOM5 0.2 +59.0 58996 0.3 LOC101929498 lnc-MTRNR2L7-2 ANKRD30A piR-52771-001 LINC00993
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00993 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00993 Gene

Genomic Locations for LINC00993 Gene
chr10:37,248,118-37,347,031
(GRCh38/hg38)
Size:
98,914 bases
Orientation:
Plus strand
chr10:37,598,113-37,635,959
(GRCh37/hg19)
Size:
37,847 bases
Orientation:
Plus strand

Genomic View for LINC00993 Gene

Genes around LINC00993 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00993 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00993 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00993 Gene

Proteins for LINC00993 Gene

Post-translational modifications for LINC00993 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00993 Gene

Domains & Families for LINC00993 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00993 Gene

Function for LINC00993 Gene

Phenotypes From GWAS Catalog for LINC00993 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00993 Gene

Localization for LINC00993 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00993 Gene

Pathways & Interactions for LINC00993 Gene

PathCards logo

SuperPathways for LINC00993 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00993 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00993 Gene

Drugs & Compounds for LINC00993 Gene

No Compound Related Data Available

Transcripts for LINC00993 Gene

mRNA/cDNA for LINC00993 Gene

11 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
8 LncBook transcripts :
9 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00993 Gene

No ASD Table

Relevant External Links for LINC00993 Gene

GeneLoc Exon Structure for
LINC00993

Expression for LINC00993 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00993 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00993 Gene

This gene is overexpressed in Breast - Mammary Tissue (x49.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00993

genes like me logo Genes that share expression patterns with LINC00993: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00993 Gene

Orthologs for LINC00993 Gene

Evolution for LINC00993 Gene

ENSEMBL:
Gene Tree for LINC00993 (if available)
TreeFam:
Gene Tree for LINC00993 (if available)

No data available for Orthologs for LINC00993 Gene

Paralogs for LINC00993 Gene

No data available for Paralogs for LINC00993 Gene

Variants for LINC00993 Gene

Additional dbSNP identifiers (rs#s) for LINC00993 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00993 Gene

Variant ID Type Subtype PubMed ID
esv1000586 CNV deletion 20482838
esv2735517 CNV deletion 23290073
esv2735584 CNV deletion 23290073
esv2750892 CNV loss 17911159
esv2759742 CNV gain+loss 17122850
esv3622951 CNV gain 21293372
esv3891785 CNV gain 25118596
nsv1045454 CNV loss 25217958

Additional Variant Information for LINC00993 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00993

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00993 Gene

Disorders for LINC00993 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00993 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00993

genes like me logo Genes that share disorders with LINC00993: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00993 Gene

Publications for LINC00993 Gene

  1. LncRNA TCONS_l2_00002973 correlates with less advanced tumor stage and favorable survival, and also inhibits cancer cells proliferation while enhancing apoptosis in triple-negative breast cancer. (PMID: 31128002) Yan J … Wu Z (Journal of B.U.ON. : official journal of the Balkan Union of Oncology 2019) 2 3 54

Products for LINC00993 Gene

Sources for LINC00993 Gene