Aliases for LINC00989 Gene

Subcategory (RNA class) for LINC00989 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00989 Gene

  • Long Intergenic Non-Protein Coding RNA 989 2 3 5
  • LINC00989 2 5 165
  • NONHSAG038295.2 91
  • HSALNG0035430 164

External Ids for LINC00989 Gene

Previous GeneCards Identifiers for LINC00989 Gene

  • GC04P080415

Summaries for LINC00989 Gene

GeneCards Summary for LINC00989 Gene

LINC00989 (Long Intergenic Non-Protein Coding RNA 989) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00989 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00989 Gene

Genomics for LINC00989 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00989 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J079492 Promoter 0.4 EPDnew 605.3 +25.1 25057 0.1 IKZF1 LINC00989 piR-48965-102 GK2 LINC01088 ANTXR2
GH04J079491 Promoter 0.4 EPDnew 600.4 +24.9 24871 0.1 IKZF1 piR-48965-102 LINC00989 GK2 LINC01088 ANTXR2
GH04J079575 Enhancer 0.8 Ensembl ENCODE 35.2 +108.4 108369 1.8 CTCF ZSCAN4 REST RAD21 TRIM22 SMC3 CEBPG SPI1 TAL1 ZNF654 LINC00989 PCAT4 OR7E94P LOC107986294 lnc-GK2-1 GK2 ANTXR2
GH04J078691 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 16.5 -775.0 -775019 6.2 ZNF629 LEF1 IKZF1 JUND DDX20 MTA2 PHF21A PKNOX1 ZNF24 MTA1 ENSG00000287632 BMP2K CNOT6L LINC00989 SERBP1P5 OR7E94P ENSG00000200998 ENSG00000239793 LINC01094 piR-32559-315
GH04J079592 Enhancer 0.5 Ensembl 30.3 +125.0 124981 1 RFX1 CTBP1 CUX1 GATA3 SMARCE1 LINC00989 PCAT4 ENSG00000251399 OR7E94P lnc-GK2-1 LOC107986294 GK2 ANTXR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00989 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00989 Gene

Genomic Locations for LINC00989 Gene
chr4:79,467,520-79,623,479
(GRCh38/hg38)
Size:
155,960 bases
Orientation:
Plus strand
chr4:80,413,570-80,497,614
(GRCh37/hg19)
Size:
84,045 bases
Orientation:
Plus strand

Genomic View for LINC00989 Gene

Genes around LINC00989 on UCSC Golden Path with GeneCards custom track
LINC00989 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00989 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00989 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00989 Gene

Proteins for LINC00989 Gene

Post-translational modifications for LINC00989 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00989 Gene

Domains & Families for LINC00989 Gene

Gene Families for LINC00989 Gene

genes like me logo Genes that share domains with LINC00989: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00989 Gene

Function for LINC00989 Gene

Phenotypes From GWAS Catalog for LINC00989 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00989 Gene

Localization for LINC00989 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00989 Gene

Pathways & Interactions for LINC00989 Gene

PathCards logo

SuperPathways for LINC00989 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00989 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00989 Gene

Drugs & Compounds for LINC00989 Gene

No Compound Related Data Available

Transcripts for LINC00989 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00989 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075CD21_9606 lncRNA 2054 5

HGNC: 48918,

RefSeq: NR_038826,

LncBook: HSALNT0074175,

LNCipedia: LINC00989:3,

NONCODE: NONHSAT097114.2,

URS0000EF4279_9606 lncRNA 2662 1

Ensembl: ENST00000661950 (view in UCSC) ,

URS0000EF579B_9606 lncRNA 2660 1

Ensembl: ENST00000661529 (view in UCSC) ,

URS0000EF6458_9606 lncRNA 2086 1

Ensembl: ENST00000508174 (view in UCSC) ,

URS0000EEF529_9606 lncRNA 2080 1

Ensembl: ENST00000515544 (view in UCSC) ,

LINC00989 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00989 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00989 Gene

No ASD Table

Relevant External Links for LINC00989 Gene

GeneLoc Exon Structure for
LINC00989

Expression for LINC00989 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00989 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00989 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.8) and Artery - Coronary (x4.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00989

genes like me logo Genes that share expression patterns with LINC00989: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00989 Gene

Orthologs for LINC00989 Gene

Evolution for LINC00989 Gene

ENSEMBL:
Gene Tree for LINC00989 (if available)
TreeFam:
Gene Tree for LINC00989 (if available)

No data available for Orthologs for LINC00989 Gene

Paralogs for LINC00989 Gene

No data available for Paralogs for LINC00989 Gene

Variants for LINC00989 Gene

Additional dbSNP identifiers (rs#s) for LINC00989 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00989 Gene

Variant ID Type Subtype PubMed ID
esv1181170 CNV deletion 17803354
esv2727859 CNV deletion 23290073
nsv1006026 CNV loss 25217958
nsv1123809 CNV deletion 24896259
nsv1136880 CNV deletion 24896259
nsv1149846 CNV deletion 26484159
nsv829980 CNV loss 17160897
nsv999174 CNV loss 25217958

Additional Variant Information for LINC00989 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00989

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00989 Gene

Disorders for LINC00989 Gene

No disorders were found for LINC00989 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00989 Gene

Publications for LINC00989 Gene

  1. Evaluation of four genetic variants in han chinese subjects with high myopia. (PMID: 25628894) Ye Z … Shi Y (Journal of ophthalmology 2015) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC00989 Gene

Sources for LINC00989 Gene