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Aliases for LINC00989 Gene

Subcategory (RNA class) for LINC00989 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00989 Gene

  • Long Intergenic Non-Protein Coding RNA 989 2 3 5

External Ids for LINC00989 Gene

Previous GeneCards Identifiers for LINC00989 Gene

  • GC04P080415

Summaries for LINC00989 Gene

GeneCards Summary for LINC00989 Gene

LINC00989 (Long Intergenic Non-Protein Coding RNA 989) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00989 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00989 Gene

Genomics for LINC00989 Gene

GeneHancer (GH) Regulatory Elements for LINC00989 Gene

Promoters and enhancers for LINC00989 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J079491 Enhancer 0.3 Ensembl 624.1 -0.3 -315 0.6 IKZF1 LINC00989 GC04P079476
GH04J079575 Enhancer 0.9 Ensembl ENCODE 35.2 +83.2 83173 2.4 CC2D1A CTCF CBFA2T2 RAD21 ZNF547 REST ZSCAN4 TRIM22 SMC3 CEBPG LINC00989 PCAT4 OR7E94P GC04P079531
GH04J078691 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 16.5 -799.8 -799815 5.2 CC2D1A ZKSCAN8 CBFA2T2 ZNF148 MLLT1 GTF2F1 CDC5L BACH1 TRIM24 EGR1 BMP2K CNOT6L LINC00989 SERBP1P5 OR7E94P ENSG00000200998 ENSG00000239793 GC04P078707 HIGD1AP13
GH04J079592 Enhancer 0.5 Ensembl 30.3 +100.3 100284 0.6 CTBP1 RFX1 CUX1 GATA3 SMARCE1 LINC00989 PCAT4 ENSG00000251399 OR7E94P
GH04J079598 Enhancer 0.4 FANTOM5 Ensembl 30.2 +107.3 107285 3 LINC00989 PCAT4 ENSG00000251399 GC04P079613
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00989 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00989 Gene

Genomic Locations for LINC00989 Gene
chr4:79,492,416-79,576,460
(GRCh38/hg38)
Size:
84,045 bases
Orientation:
Plus strand
chr4:80,413,570-80,497,614
(GRCh37/hg19)
Size:
84,045 bases
Orientation:
Plus strand

Genomic View for LINC00989 Gene

Genes around LINC00989 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00989 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00989 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00989 Gene

Proteins for LINC00989 Gene

Post-translational modifications for LINC00989 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00989 Gene

Domains & Families for LINC00989 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00989 Gene

Function for LINC00989 Gene

Phenotypes From GWAS Catalog for LINC00989 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00989 Gene

Localization for LINC00989 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00989 Gene

Pathways & Interactions for LINC00989 Gene

PathCards logo

SuperPathways for LINC00989 Gene

No Data Available

Interacting Proteins for LINC00989 Gene

Gene Ontology (GO) - Biological Process for LINC00989 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00989 Gene

Drugs & Compounds for LINC00989 Gene

No Compound Related Data Available

Transcripts for LINC00989 Gene

mRNA/cDNA for LINC00989 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00989 Gene

No ASD Table

Relevant External Links for LINC00989 Gene

GeneLoc Exon Structure for
LINC00989
ECgene alternative splicing isoforms for
LINC00989

Expression for LINC00989 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00989 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00989 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.8) and Artery - Coronary (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of LINC00989 Gene:

LINC00989
genes like me logo Genes that share expression patterns with LINC00989: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00989 Gene

Orthologs for LINC00989 Gene

Evolution for LINC00989 Gene

ENSEMBL:
Gene Tree for LINC00989 (if available)
TreeFam:
Gene Tree for LINC00989 (if available)

No data available for Orthologs for LINC00989 Gene

Paralogs for LINC00989 Gene

No data available for Paralogs for LINC00989 Gene

Variants for LINC00989 Gene

Sequence variations from dbSNP and Humsavar for LINC00989 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000018795 -- 79,524,746(+) T/A/G intron_variant
rs1000055251 -- 79,498,090(+) C/T intron_variant
rs1000068581 -- 79,514,630(+) CTC/ intron_variant
rs1000071101 -- 79,567,104(+) C/A intron_variant
rs1000085134 -- 79,530,961(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00989 Gene

Variant ID Type Subtype PubMed ID
esv1181170 CNV deletion 17803354
esv2727859 CNV deletion 23290073
nsv1006026 CNV loss 25217958
nsv1123809 CNV deletion 24896259
nsv1136880 CNV deletion 24896259
nsv1149846 CNV deletion 26484159
nsv829980 CNV loss 17160897
nsv999174 CNV loss 25217958

Additional Variant Information for LINC00989 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00989

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00989 Gene

Disorders for LINC00989 Gene

Additional Disease Information for LINC00989

No disorders were found for LINC00989 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00989 Gene

Publications for LINC00989 Gene

  1. Evaluation of four genetic variants in han chinese subjects with high myopia. (PMID: 25628894) Ye Z … Shi Y (Journal of ophthalmology 2015) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC00989 Gene

Sources for LINC00989 Gene

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