Aliases for LINC00989 Gene

Subcategory (RNA class) for LINC00989 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00989 Gene

  • Long Intergenic Non-Protein Coding RNA 989 2 3 5
  • LINC00989 2 168
  • NONHSAG038295 92
  • HSALNG0035430 167

External Ids for LINC00989 Gene

Previous GeneCards Identifiers for LINC00989 Gene

  • GC04P080415

Summaries for LINC00989 Gene

GeneCards Summary for LINC00989 Gene

LINC00989 (Long Intergenic Non-Protein Coding RNA 989) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00989 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00989 Gene

Genomics for LINC00989 Gene

GeneHancer (GH) Regulatory Elements for LINC00989 Gene

Promoters and enhancers for LINC00989 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J079575 Enhancer 0.8 Ensembl ENCODE 35.2 +108.4 108369 1.8 EP300 CTCF REST RAD21 TRIM22 SMC3 CEBPG MAX SPI1 TAL1 LINC00989 PCAT4 OR7E94P lnc-GK2-1 piR-32559-317
GH04J078691 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 16.5 -775.0 -775019 6.2 GTF2E2 PHB2 ZBTB11 AFF1 TRIM28 TARDBP REST HES1 NR3C1 TOE1 ENSG00000287632 BMP2K LINC00989 SERBP1P5 OR7E94P ENSG00000200998 ENSG00000239793 LINC01094 piR-32559-315
GH04J079578 Enhancer 0.4 Ensembl 35.1 +111.1 111081 1.2 SPI1 GATA2 POLR2A MAX LINC00989 OR7E94P lnc-GK2-1 piR-32559-317
GH04J079585 Enhancer 0.4 Ensembl 34.9 +118.2 118181 0.6 HDAC2 NANOG TCF12 HLF LINC00989 OR7E94P lnc-GK2-1 piR-32559-317
GH04J079592 Enhancer 0.4 Ensembl 30.3 +125.0 124981 1 RFX1 CUX1 CTBP1 GATA3 SMARCE1 LINC00989 PCAT4 ENSG00000251399 OR7E94P lnc-GK2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00989 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00989 Gene

Genomic Locations for LINC00989 Gene
chr4:79,467,520-79,623,479
(GRCh38/hg38)
Size:
155,960 bases
Orientation:
Plus strand
chr4:80,413,570-80,497,614
(GRCh37/hg19)
Size:
84,045 bases
Orientation:
Plus strand

Genomic View for LINC00989 Gene

Genes around LINC00989 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00989 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00989 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00989 Gene

Proteins for LINC00989 Gene

Post-translational modifications for LINC00989 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00989 Gene

Domains & Families for LINC00989 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00989 Gene

Function for LINC00989 Gene

Phenotypes From GWAS Catalog for LINC00989 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00989 Gene

Localization for LINC00989 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00989 Gene

Pathways & Interactions for LINC00989 Gene

PathCards logo

SuperPathways for LINC00989 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00989 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00989 Gene

Drugs & Compounds for LINC00989 Gene

No Compound Related Data Available

Transcripts for LINC00989 Gene

mRNA/cDNA for LINC00989 Gene

15 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
11 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00989 Gene

No ASD Table

Relevant External Links for LINC00989 Gene

GeneLoc Exon Structure for
LINC00989

Expression for LINC00989 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00989 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00989 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.8) and Artery - Coronary (x4.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00989

genes like me logo Genes that share expression patterns with LINC00989: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00989 Gene

Orthologs for LINC00989 Gene

Evolution for LINC00989 Gene

ENSEMBL:
Gene Tree for LINC00989 (if available)
TreeFam:
Gene Tree for LINC00989 (if available)

No data available for Orthologs for LINC00989 Gene

Paralogs for LINC00989 Gene

No data available for Paralogs for LINC00989 Gene

Variants for LINC00989 Gene

Additional dbSNP identifiers (rs#s) for LINC00989 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00989 Gene

Variant ID Type Subtype PubMed ID
esv1181170 CNV deletion 17803354
esv2727859 CNV deletion 23290073
nsv1006026 CNV loss 25217958
nsv1123809 CNV deletion 24896259
nsv1136880 CNV deletion 24896259
nsv1149846 CNV deletion 26484159
nsv829980 CNV loss 17160897
nsv999174 CNV loss 25217958

Additional Variant Information for LINC00989 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00989

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00989 Gene

Disorders for LINC00989 Gene

Additional Disease Information for LINC00989

No disorders were found for LINC00989 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00989 Gene

Publications for LINC00989 Gene

  1. Evaluation of four genetic variants in han chinese subjects with high myopia. (PMID: 25628894) Ye Z … Shi Y (Journal of ophthalmology 2015) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC00989 Gene

Sources for LINC00989 Gene