Aliases for LINC00972 Gene

Subcategory (RNA class) for LINC00972 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00972 Gene

  • Long Intergenic Non-Protein Coding RNA 972 2 3 5
  • LINC00972 2 168
  • NONHSAG048117 92
  • HSALNG0059321 167

External Ids for LINC00972 Gene

Previous GeneCards Identifiers for LINC00972 Gene

  • GC07P085052

Summaries for LINC00972 Gene

GeneCards Summary for LINC00972 Gene

LINC00972 (Long Intergenic Non-Protein Coding RNA 972) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00972 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00972 Gene

Genomics for LINC00972 Gene

GeneHancer (GH) Regulatory Elements for LINC00972 Gene

Promoters and enhancers for LINC00972 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J085471 Enhancer 0.5 ENCODE 0.2 +50.8 50846 0.6 FOS SPI1 CTCF JUNB BHLHE40 NFIC MEF2A SEMA3D HSALNG0059328 LINC00972
GH07J085489 Enhancer 0.5 ENCODE 0.2 +68.5 68498 0.1 JUND FOS EZH2 MAFK ZNF843 BHLHE40 SP7 TAF1 HSALNG0059328 LINC00972
GH07J085396 Enhancer 0.3 Ensembl 0.4 -24.1 -24121 1.6 NANOG DYNLL1P7 LINC00972
GH07J085480 Enhancer 0.4 ENCODE 0.2 +59.4 59410 1 ZNF316 MAFF MAFK RCOR1 POLR2A HSALNG0059328 LINC00972
GH07J085392 Enhancer 0.3 Ensembl 0.3 -28.4 -28421 0.2 CTCF DYNLL1P7 LINC00972
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00972 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00972 Gene

Genomic Locations for LINC00972 Gene
chr7:85,421,122-85,489,338
(GRCh38/hg38)
Size:
68,217 bases
Orientation:
Plus strand
chr7:85,050,438-85,118,654
(GRCh37/hg19)
Size:
68,217 bases
Orientation:
Plus strand

Genomic View for LINC00972 Gene

Genes around LINC00972 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00972 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00972 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00972 Gene

Proteins for LINC00972 Gene

Post-translational modifications for LINC00972 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00972 Gene

Domains & Families for LINC00972 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00972 Gene

Function for LINC00972 Gene

Phenotypes From GWAS Catalog for LINC00972 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00972 Gene

Localization for LINC00972 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00972 Gene

Pathways & Interactions for LINC00972 Gene

PathCards logo

SuperPathways for LINC00972 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00972 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00972 Gene

Drugs & Compounds for LINC00972 Gene

No Compound Related Data Available

Transcripts for LINC00972 Gene

mRNA/cDNA for LINC00972 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00972 Gene

No ASD Table

Relevant External Links for LINC00972 Gene

GeneLoc Exon Structure for
LINC00972

Expression for LINC00972 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00972 Gene

genes like me logo Genes that share expression patterns with LINC00972: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00972 Gene

Orthologs for LINC00972 Gene

Evolution for LINC00972 Gene

ENSEMBL:
Gene Tree for LINC00972 (if available)
TreeFam:
Gene Tree for LINC00972 (if available)

No data available for Orthologs for LINC00972 Gene

Paralogs for LINC00972 Gene

No data available for Paralogs for LINC00972 Gene

Variants for LINC00972 Gene

Additional dbSNP identifiers (rs#s) for LINC00972 Gene

Additional Variant Information for LINC00972 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00972

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00972 Gene

Disorders for LINC00972 Gene

Additional Disease Information for LINC00972

No disorders were found for LINC00972 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00972 Gene

Publications for LINC00972 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 54

Products for LINC00972 Gene

Sources for LINC00972 Gene