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Aliases for LINC00964 Gene

Subcategory (RNA class) for LINC00964 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00964 Gene

  • Long Intergenic Non-Protein Coding RNA 964 2 3 5

External Ids for LINC00964 Gene

Previous GeneCards Identifiers for LINC00964 Gene

  • GC08P125863

Summaries for LINC00964 Gene

GeneCards Summary for LINC00964 Gene

LINC00964 (Long Intergenic Non-Protein Coding RNA 964) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00964 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00964 Gene

Genomics for LINC00964 Gene

GeneHancer (GH) Regulatory Elements for LINC00964 Gene

Promoters and enhancers for LINC00964 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I124846 Enhancer 1.4 Ensembl ENCODE dbSUPER 550.8 -0.6 -644 3.1 PKNOX1 ATF1 ARNT YY1 TCF12 ZNF766 ATF7 RUNX3 CAVIN1 JUNB LINC00964 ZNF572 MTSS1 LOC105375744 SQLE LOC105375743 MIR4662B
GH08I124955 Enhancer 0.9 ENCODE 38.7 +107.7 107653 1 HDGF PKNOX1 ATF1 YY1 TCF12 CBX5 FOS ATF7 RXRA NCOA1 PIR52062 LINC00964 SQLE LOC105375744 GC08P124985 PIR57426 ZNF572
GH08I125216 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12 +370.8 370808 5.1 HDGF PKNOX1 FOXA2 SMAD1 ARID4B NEUROD1 SIN3A ETS1 YY1 ATF7 ENSG00000253106 WASHC5-AS1 TRIB1 LINC00964 TRMT12 RNF139-AS1 NSMCE2 WASHC5 MTSS1 RN7SL329P
GH08I125232 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +383.8 383827 1.5 FOXA2 ARID4B SIN3A BRCA1 ATF7 FOS KAT8 SREBF1 NFIL3 MAFF TRIB1 LINC00964 WASHC5 NSMCE2 RN7SL329P
GH08I124996 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 8.6 +150.7 150724 5.3 PKNOX1 CLOCK ARID4B SIN3A FEZF1 DMAP1 ZBTB7B POLR2B ZNF207 ZNF143 LOC105375744 SQLE TRMT12 RNF139 LOC105375740 RNF139-AS1 LINC00964 TATDN1 GC08P125034
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00964 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00964 Gene

Genomic Locations for LINC00964 Gene
chr8:124,848,737-124,954,328
(GRCh38/hg38)
Size:
105,592 bases
Orientation:
Plus strand
chr8:125,860,979-125,966,570
(GRCh37/hg19)

Genomic View for LINC00964 Gene

Genes around LINC00964 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00964 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00964 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00964 Gene

Proteins for LINC00964 Gene

Post-translational modifications for LINC00964 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00964 Gene

Domains & Families for LINC00964 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00964 Gene

Function for LINC00964 Gene

Phenotypes From GWAS Catalog for LINC00964 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00964 Gene

Localization for LINC00964 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00964 Gene

Pathways & Interactions for LINC00964 Gene

SuperPathways for LINC00964 Gene

No Data Available

Interacting Proteins for LINC00964 Gene

Gene Ontology (GO) - Biological Process for LINC00964 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00964 Gene

Drugs & Compounds for LINC00964 Gene

No Compound Related Data Available

Transcripts for LINC00964 Gene

mRNA/cDNA for LINC00964 Gene

(2) Selected AceView cDNA sequences:
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00964 Gene

No ASD Table

Relevant External Links for LINC00964 Gene

GeneLoc Exon Structure for
LINC00964
ECgene alternative splicing isoforms for
LINC00964

Expression for LINC00964 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00964 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00964 Gene

This gene is overexpressed in Testis (x26.8) and Prostate (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of LINC00964 Gene:

LINC00964
genes like me logo Genes that share expression patterns with LINC00964: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00964 Gene

Orthologs for LINC00964 Gene

Evolution for LINC00964 Gene

ENSEMBL:
Gene Tree for LINC00964 (if available)
TreeFam:
Gene Tree for LINC00964 (if available)

No data available for Orthologs for LINC00964 Gene

Paralogs for LINC00964 Gene

No data available for Paralogs for LINC00964 Gene

Variants for LINC00964 Gene

Sequence variations from dbSNP and Humsavar for LINC00964 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000534343 -- 124,941,319(+) G/C upstream_transcript_variant
rs1000648945 -- 124,940,995(+) A/G upstream_transcript_variant
rs1000677476 -- 124,947,620(+) A/G intron_variant
rs1001044392 -- 124,940,141(+) C/A upstream_transcript_variant
rs1001217518 -- 124,947,380(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00964 Gene

Variant ID Type Subtype PubMed ID
dgv1416e214 CNV gain 21293372
dgv7310n100 CNV gain 25217958
esv3576606 CNV gain 25503493
esv3891476 CNV gain 25118596

Additional Variant Information for LINC00964 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00964

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00964 Gene

Disorders for LINC00964 Gene

Additional Disease Information for LINC00964

No disorders were found for LINC00964 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00964 Gene

Publications for LINC00964 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC00964 Gene

Sources for LINC00964 Gene

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