Aliases for LINC00963 Gene

Data sources for LINC00963 Gene:

RNA type for LINC00963 Gene

lncRNA

Aliases for LINC00963 Gene

External Ids for LINC00963 Gene

Previous GeneCards Identifiers for LINC00963 Gene

  • GC09P132248
  • GC09P132253

Summaries for LINC00963 Gene

GeneCards Summary for LINC00963 Gene

LINC00963 (Long Intergenic Non-Protein Coding RNA 963) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00963 include Prostate Disease and Renal Cell Carcinoma, Nonpapillary.

Additional gene information for LINC00963 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00963 Gene

Genomics for LINC00963 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00963 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00963 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00963 Gene

Latest Assembly
chr9:129,476,226-129,516,355
(GRCh38/hg38)
Size:
40,130 bases
Orientation:
Plus strand

Previous Assembly
chr9:132,250,939-132,275,965
(GRCh37/hg19 by Entrez Gene)
Size:
25,027 bases
Orientation:
Plus strand

chr9:132,245,730-132,275,947
(GRCh37/hg19 by Ensembl)
Size:
30,218 bases
Orientation:
Plus strand

Genomic View for LINC00963 Gene

Genes around LINC00963 on UCSC Golden Path with GeneCards custom track
LINC00963 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00963 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00963 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00963 Gene

Proteins for LINC00963 Gene

Post-translational modifications for LINC00963 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00963 Gene

Domains & Families for LINC00963 Gene

Gene Families for LINC00963 Gene

genes like me logo Genes that share domains with LINC00963: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00963 Gene

Function for LINC00963 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00963 Gene

Localization for LINC00963 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00963 gene
Compartment Confidence
extracellular 1
cytoskeleton 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00963 Gene

Pathways & Interactions for LINC00963 Gene

PathCards logo

SuperPathways for LINC00963 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00963 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00963 Gene

Drugs & Compounds for LINC00963 Gene

No Compound Related Data Available

Transcripts for LINC00963 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00963 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008BE0FC_9606 lncRNA 910 4

Ensembl: ENST00000454635 (view in UCSC) ,

LncBook: HSALNT0155984,

LNCipedia: LINC00963:18,

NONCODE: NONHSAT220261.1,

URS00009B5C7E_9606 lncRNA 667 4

Ensembl: ENST00000624009 (view in UCSC) ,

LncBook: HSALNT0155995,

LNCipedia: LINC00963:23,

NONCODE: NONHSAT220264.1,

URS00008BD614_9606 lncRNA 475 4

Ensembl: ENST00000607931 (view in UCSC) ,

LncBook: HSALNT0156000,

LNCipedia: LINC00963:27,

NONCODE: NONHSAT220269.1,

URS00009AF742_9606 lncRNA 475 4

Ensembl: ENST00000624390 (view in UCSC) ,

LncBook: HSALNT0155996,

LNCipedia: LINC00963:24,

NONCODE: NONHSAT220266.1,

URS00009C560C_9606 lncRNA 444 4

Ensembl: ENST00000622972 (view in UCSC) ,

LncBook: HSALNT0155994,

LNCipedia: LINC00963:21,

NONCODE: NONHSAT220265.1,

LINC00963 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00963 Gene

11 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00963 Gene

No ASD Table

Relevant External Links for LINC00963 Gene

GeneLoc Exon Structure for
LINC00963

Expression for LINC00963 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00963 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00963

genes like me logo Genes that share expression patterns with LINC00963: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00963 Gene

Orthologs for LINC00963 Gene

Evolution for LINC00963 Gene

ENSEMBL:
Gene Tree for LINC00963 (if available)
TreeFam:
Gene Tree for LINC00963 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00963

No data available for Orthologs for LINC00963 Gene

Paralogs for LINC00963 Gene

No data available for Paralogs for LINC00963 Gene

Variants for LINC00963 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00963 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00963 Gene

Variant ID Type Subtype PubMed ID
esv2739090 CNV deletion 23290073
esv996110 CNV deletion 20482838
nsv466588 CNV loss 19166990
nsv615447 CNV loss 21841781
nsv818726 CNV gain 17921354
nsv831730 CNV loss 17160897

Additional Variant Information for LINC00963 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00963
Leiden Open Variation Database (LOVD)
LINC00963

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00963 Gene

Disorders for LINC00963 Gene

MalaCards: The human disease database

(5) MalaCards diseases for LINC00963 Gene - From: LNC and COP

Disorder Aliases PubMed IDs
prostate disease
  • prostate diseases
renal cell carcinoma, nonpapillary
  • rcc
high grade glioma
  • glial cell tumor
glioblastoma
  • adult glioblastoma multiforme
prostate cancer
  • prostate cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00963

genes like me logo Genes that share disorders with LINC00963: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00963 Gene

Publications for LINC00963 Gene

  1. Linc00963: a novel, long non-coding RNA involved in the transition of prostate cancer from androgen-dependence to androgen-independence. (PMID: 24691949) Wang L … Zhu Q (International journal of oncology 2014) 2 3 72
  2. Effects of Long Non-Coding RNA LINC00963 on Renal Interstitial Fibrosis and Oxidative Stress of Rats with Chronic Renal Failure via the Foxo Signaling Pathway. (PMID: 29627834) Chen W … Wang ZK (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2018) 2 3
  3. MetaLnc9 Facilitates Lung Cancer Metastasis via a PGK1-Activated AKT/mTOR Pathway. (PMID: 28923857) Yu T … Yao M (Cancer research 2017) 2 3
  4. Long noncoding RNA LINC00963 induces NOP2 expression by sponging tumor suppressor miR-542-3p to promote metastasis in prostate cancer. (PMID: 32554858) Sun F … Zhu Y (Aging 2020) 3
  5. LINC00963 predicts poor prognosis and promotes esophageal cancer cells invasion via targeting miR-214-5p/RAB14 axis. (PMID: 31957829) Liu HF … Fan YK (European review for medical and pharmacological sciences 2020) 3

Products for LINC00963 Gene

Sources for LINC00963 Gene