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LINC00958 (Long Intergenic Non-Protein Coding RNA 958) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00958 include Bladder Cancer and Breast Cancer.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH11J012988 | Promoter/Enhancer | 1.6 | EPDnew Ensembl ENCODE | 640.6 | +0.4 | 357 | 1.3 | ARHGAP35 LEF1 IKZF1 JUND DDX20 PKNOX1 ZNF24 MTA1 NR2C1 DPF2 | LINC00958 RF00017-869 RASSF10 TEAD1 | |
GH11J012985 | Promoter | 0.3 | EPDnew | 600.4 | +5.3 | 5266 | 0.1 | LINC00958 RF00017-869 RASSF10 TEAD1 | ||
GH11J013007 | Promoter/Enhancer | 1.5 | Ensembl ENCODE dbSUPER | 21.6 | -20.7 | -20709 | 6.5 | CREB1 GATAD2A TEAD4 TFE3 SOX13 KDM1A RCOR2 BACH1 RELA ZIC2 | RASSF10 RASSF10-DT LINC00958 ENSG00000252329 RF00994-166 ARNTL | |
GH11J013065 | Enhancer | 0.8 | Ensembl ENCODE | 16.4 | -76.0 | -76028 | 0.9 | GATAD2A RXRB CEBPA SOX13 CEBPB TCF7 SMAD4 BCL6 HNF4A NFIL3 | LINC00958 RF00994-166 RASSF10 ENSG00000255558 ARNTL | |
GH11J013030 | Enhancer | 0.6 | Ensembl ENCODE | 21 | -41.5 | -41504 | 1 | ZBTB17 NFIC NFIB NFIA | LINC00958 RASSF10 RF00994-166 ARNTL |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS000012FD2F_9606 | lncRNA | 580 | 4 |
Ensembl: ENST00000529328 (view in UCSC) , LncBook: HSALNT0172272, LNCipedia: LINC00958:15, NONCODE: NONHSAT018088.2, |
URS00003A578A_9606 | lncRNA | 1558 | 3 |
Ensembl: ENST00000504230 (view in UCSC) , LncBook: HSALNT0172267, LNCipedia: LINC00958:1, |
URS000075EDB6_9606 | lncRNA | 1559 | 2 |
HGNC: 48671, RefSeq: NR_038904, |
URS00009C5FA1_9606 | lncRNA | 1121 | 2 |
Ensembl: ENST00000527945 (view in UCSC) , LNCipedia: LINC00958:5, |
URS0000EF18E2_9606 | lncRNA | 2013 | 1 |
Ensembl: ENST00000653981 (view in UCSC) , |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv275080 | CNV | gain+loss | 21479260 |
esv3625395 | CNV | gain | 21293372 |
esv3625402 | CNV | gain | 21293372 |
Disorder | Aliases | PubMed IDs |
---|---|---|
bladder cancer |
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breast cancer |
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