LINC00958 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 958

GC11M012930
GIFtS:
16
See more...

Aliases for LINC00958 Gene

Subcategory (RNA class) for LINC00958 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC00958 Gene

  • Long Intergenic Non-Protein Coding RNA 958 2 3 5
  • LINC00958 2 5 165
  • NONHSAG007695.2 91
  • HSALNG0082749 164
  • CTC-497E21.4 3
  • BLACAT2 3

External Ids for LINC00958 Gene

Previous GeneCards Identifiers for LINC00958 Gene

  • GC11M012985
  • GC11M012963
  • GC11M012961

Summaries for LINC00958 Gene

GeneCards Summary for LINC00958 Gene

LINC00958 (Long Intergenic Non-Protein Coding RNA 958) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00958 include Bladder Cancer and Breast Cancer.

Additional gene information for LINC00958 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00958 Gene

Genomics for LINC00958 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC00958 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J012988 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 640.6 +0.4 357 1.3 ARHGAP35 LEF1 IKZF1 JUND DDX20 PKNOX1 ZNF24 MTA1 NR2C1 DPF2 LINC00958 RF00017-869 RASSF10 TEAD1
GH11J012985 Promoter 0.3 EPDnew 600.4 +5.3 5266 0.1 LINC00958 RF00017-869 RASSF10 TEAD1
GH11J013007 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 21.6 -20.7 -20709 6.5 CREB1 GATAD2A TEAD4 TFE3 SOX13 KDM1A RCOR2 BACH1 RELA ZIC2 RASSF10 RASSF10-DT LINC00958 ENSG00000252329 RF00994-166 ARNTL
GH11J013065 Enhancer 0.8 Ensembl ENCODE 16.4 -76.0 -76028 0.9 GATAD2A RXRB CEBPA SOX13 CEBPB TCF7 SMAD4 BCL6 HNF4A NFIL3 LINC00958 RF00994-166 RASSF10 ENSG00000255558 ARNTL
GH11J013030 Enhancer 0.6 Ensembl ENCODE 21 -41.5 -41504 1 ZBTB17 NFIC NFIB NFIA LINC00958 RASSF10 RF00994-166 ARNTL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00958 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00958 Gene

Genomic Locations for LINC00958 Gene
chr11:12,930,482-12,989,597
(GRCh38/hg38)
Size:
59,116 bases
Orientation:
Minus strand
chr11:12,984,057-13,011,095
(GRCh37/hg19)
Size:
27,039 bases
Orientation:
Minus strand

Genomic View for LINC00958 Gene

Genes around LINC00958 on UCSC Golden Path with GeneCards custom track
LINC00958 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00958 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00958 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00958 Gene

Proteins for LINC00958 Gene

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  1. Antibody
  2. Protein
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Post-translational modifications for LINC00958 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00958 Gene

Domains & Families for LINC00958 Gene

Gene Families for LINC00958 Gene

HGNC:
genes like me logo Genes that share domains with LINC00958: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00958 Gene

Function for LINC00958 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC00958 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00958 Gene

Localization for LINC00958 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00958 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00958 Gene

Pathways & Interactions for LINC00958 Gene

PathCards logo

SuperPathways for LINC00958 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00958 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00958 Gene

Drugs & Compounds for LINC00958 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LINC00958 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00958 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000012FD2F_9606 lncRNA 580 4

Ensembl: ENST00000529328 (view in UCSC) ,

LncBook: HSALNT0172272,

LNCipedia: LINC00958:15,

NONCODE: NONHSAT018088.2,

URS00003A578A_9606 lncRNA 1558 3

Ensembl: ENST00000504230 (view in UCSC) ,

LncBook: HSALNT0172267,

LNCipedia: LINC00958:1,

URS000075EDB6_9606 lncRNA 1559 2

HGNC: 48671,

RefSeq: NR_038904,

URS00009C5FA1_9606 lncRNA 1121 2

Ensembl: ENST00000527945 (view in UCSC) ,

LNCipedia: LINC00958:5,

URS0000EF18E2_9606 lncRNA 2013 1

Ensembl: ENST00000653981 (view in UCSC) ,

LINC00958 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00958 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00958 Gene

No ASD Table

Relevant External Links for LINC00958 Gene

GeneLoc Exon Structure for
LINC00958

Expression for LINC00958 Gene

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  1. Primer
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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00958 Gene

mRNA expression in normal human tissues for LINC00958 Gene
mRNA expression by GTEx for LINC00958 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00958 Gene

This gene is overexpressed in Esophagus - Mucosa (x17.1), Kidney - Cortex (x6.1), Skin - Not Sun Exposed (Suprapubic) (x5.3), Vagina (x4.6), and Skin - Sun Exposed (Lower leg) (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00958

genes like me logo Genes that share expression patterns with LINC00958: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00958 Gene

Orthologs for LINC00958 Gene

Evolution for LINC00958 Gene

ENSEMBL:
Gene Tree for LINC00958 (if available)
TreeFam:
Gene Tree for LINC00958 (if available)

No data available for Orthologs for LINC00958 Gene

Paralogs for LINC00958 Gene

No data available for Paralogs for LINC00958 Gene

Variants for LINC00958 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC00958 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00958 Gene

Variant ID Type Subtype PubMed ID
esv275080 CNV gain+loss 21479260
esv3625395 CNV gain 21293372
esv3625402 CNV gain 21293372

Additional Variant Information for LINC00958 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00958 Gene

Disorders for LINC00958 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC00958 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
bladder cancer
  • bladder cancer, somatic
breast cancer
  • breast lobular carcinoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00958

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with LINC00958: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00958 Gene

Publications for LINC00958 Gene

  1. Long Noncoding RNA LINC00958 Accelerates Gliomagenesis Through Regulating miR-203/CDK2. (PMID: 29570358) Guo E … Zheng J (DNA and cell biology 2018) 2 3
  2. Profiling of long non-coding RNAs identifies LINC00958 and LINC01296 as candidate oncogenes in bladder cancer. (PMID: 28341852) Seitz AK … Dyrskjøt L (Scientific reports 2017) 2 3
  3. Long noncoding RNA LINC00958 promotes the oral squamous cell carcinoma by sponging miR-185-5p/YWHAZ. (PMID: 31442551) Wang Z … Cai J (Life sciences 2020) 3
  4. Long noncoding RNA LINC00958 regulates cell sensitivity to radiotherapy through RRM2 by binding to microRNA-5095 in cervical cancer. (PMID: 31169309) Zhao H … Zheng XM (Journal of cellular physiology 2019) 3
  5. LINC00958 Accelerates Cell Proliferation and Migration in Non-Small Cell Lung Cancer Through JNK/c-JUN Signaling. (PMID: 31855084) Luo Z … Chen Y (Human gene therapy methods 2019) 3

ExternalLinks

View latest publications for LINC00958 gene in Mastermind

Products for LINC00958 Gene

Sources for LINC00958 Gene