Aliases for LINC00945 Gene

Data sources for LINC00945 Gene:

RNA type for LINC00945 Gene

lncRNA

Aliases for LINC00945 Gene

External Ids for LINC00945 Gene

Previous GeneCards Identifiers for LINC00945 Gene

  • GC21P034431

Summaries for LINC00945 Gene

GeneCards Summary for LINC00945 Gene

LINC00945 (Long Intergenic Non-Protein Coding RNA 945) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00945 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00945 Gene

Genomics for LINC00945 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00945 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J033058 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 250.7 +1.5 1494 1.3 CEBPA NFIC CTCF CEBPB MAFF TCF7L2 MAFK MYC PKNOX1 POLR2A LINC00945 IFNGR2 LINC01548 IL10RB IFNAR2 OLIG1 GART IFNAR1 SON SYNJ1
GH21J033042 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -15.1 -15126 1.8 ZNF600 ZIC2 JUND ZNF518A ZBTB21 ZBTB12 ZXDB ZEB2 ZNF629 ZNF692 OLIG1 ENSG00000227757 lnc-OLIG2-2 OLIG2 LINC00945
GH21J033036 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.4 -21.2 -21201 1 ZNF600 ZIC2 CTCF MYC MAX POLR2A BHLHE40 ZNF324 ZSCAN21 GLIS2 LOC105372785 LOC107985505 lnc-C21orf62-4 lnc-OLIG2-2 IFNGR2 IFNAR2 IL10RB IFNAR1 SYNJ1 OLIG1
GH21J033064 Promoter/Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 +6.9 6895 0.2 LINC01548 ENSG00000227757 LINC00945 OLIG1 OLIG2
GH21J033067 Enhancer 0.5 dbSUPER 0.4 +9.9 9890 3.3 NFIC ZNF146 SPI1 MYC MAX POLR2A ZMYM3 LINC01548 OLIG1 ENSG00000227757 LINC00945 OLIG2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00945 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00945 Gene

Latest Assembly
chr21:33,057,827-33,065,079
(GRCh38/hg38)
Size:
7,253 bases
Orientation:
Plus strand

Previous Assembly
chr21:34,430,135-34,437,385
(GRCh37/hg19 by Entrez Gene)
Size:
7,251 bases
Orientation:
Plus strand

chr21:34,430,135-34,437,289
(GRCh37/hg19 by Ensembl)
Size:
7,155 bases
Orientation:
Plus strand

Genomic View for LINC00945 Gene

Genes around LINC00945 on UCSC Golden Path with GeneCards custom track
LINC00945 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00945 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00945 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00945 Gene

Proteins for LINC00945 Gene

Post-translational modifications for LINC00945 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00945 Gene

Domains & Families for LINC00945 Gene

Gene Families for LINC00945 Gene

genes like me logo Genes that share domains with LINC00945: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00945 Gene

Function for LINC00945 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00945 Gene

Localization for LINC00945 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00945 Gene

Pathways & Interactions for LINC00945 Gene

PathCards logo

SuperPathways for LINC00945 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00945 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00945 Gene

Drugs & Compounds for LINC00945 Gene

No Compound Related Data Available

Transcripts for LINC00945 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00945 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075C033_9606 lncRNA 854 3

RefSeq: NR_104056,

LncBook: HSALNT0272850,

LNCipedia: LINC00945:3,

URS00000C128D_9606 lncRNA 753 3

Ensembl: ENST00000453716 (view in UCSC) ,

LNCipedia: LINC00945:2,

NONCODE: NONHSAT081763.2,

URS00008B7B7B_9606 lncRNA 758 3

LncBook: HSALNT0272847,

LNCipedia: LINC00945:1,

NONCODE: NONHSAT081762.2,

URS00009B4F3E_9606 lncRNA 751 2

LncBook: HSALNT0272849,

NONCODE: NONHSAT190882.1,

URS0001BEDA50_9606 lncRNA 849 1

LncBook: HSALNT0272850,

LINC00945 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00945 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00945 Gene

No ASD Table

Relevant External Links for LINC00945 Gene

GeneLoc Exon Structure for
LINC00945

Expression for LINC00945 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00945 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00945 Gene

This gene is overexpressed in Testis (x9.7), Brain - Spinal cord (cervical c-1) (x8.7), and Whole Blood (x4.2).
genes like me logo Genes that share expression patterns with LINC00945: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00945 Gene

Orthologs for LINC00945 Gene

Evolution for LINC00945 Gene

ENSEMBL:
Gene Tree for LINC00945 (if available)
TreeFam:
Gene Tree for LINC00945 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00945

No data available for Orthologs for LINC00945 Gene

Paralogs for LINC00945 Gene

No data available for Paralogs for LINC00945 Gene

Variants for LINC00945 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00945 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC00945 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00945
Leiden Open Variation Database (LOVD)
LINC00945

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00945 Gene

Disorders for LINC00945 Gene

Additional Disease Information for LINC00945

No disorders were found for LINC00945 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00945 Gene

Publications for LINC00945 Gene

No publications were found for LINC00945 Gene.

Products for LINC00945 Gene

Sources for LINC00945 Gene