Aliases for LINC00944 Gene

Data sources for LINC00944 Gene:

RNA type for LINC00944 Gene

lncRNA

Aliases for LINC00944 Gene

External Ids for LINC00944 Gene

Previous GeneCards Identifiers for LINC00944 Gene

  • GC12M127218

Summaries for LINC00944 Gene

GeneCards Summary for LINC00944 Gene

LINC00944 (Long Intergenic Non-Protein Coding RNA 944) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00944 include Darier-White Disease.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00944 Gene

Genomics for LINC00944 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00944 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J126771 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 265.2 +0.6 561 2.7 SP1 ZNF207 IKZF1 MYC NFIC BCL11A MNT NR2C1 IRF2 TAF9B LINC00944 ENSG00000256286 lnc-DHX37-28 LOC107984449
GH12J126734 Enhancer 0.6 Ensembl ENCODE 7.9 +37.9 37918 1.2 RFX1 POLR2A BMI1 LINC00944 LINC00943 piR-38351-122 LOC107984449
GH12J126767 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.7 +4.3 4274 2.5 BATF ATF2 ZNF680 RUNX3 LINC00944 lnc-DHX37-28 LOC107984449
GH12J126762 Enhancer 0.3 Ensembl 0.4 +10.1 10118 0.8 GABPA NR2C1 lnc-DHX37-28 LINC00944 LOC107984449
GH12J126737 Promoter 0.4 EPDnew 0.3 +35.5 35485 0.1 CREB1 LINC00943 piR-38351-122 LINC00944 LOC107984449
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00944 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00944 Gene

Latest Assembly
chr12:126,729,638-126,772,519
(GRCh38/hg38)
Size:
42,882 bases
Orientation:
Minus strand

Previous Assembly
chr12:127,215,247-127,256,808
(GRCh37/hg19 by Entrez Gene)
Size:
41,562 bases
Orientation:
Minus strand

chr12:127,214,333-127,256,957
(GRCh37/hg19 by Ensembl)
Size:
42,625 bases
Orientation:
Minus strand

Genomic View for LINC00944 Gene

Genes around LINC00944 on UCSC Golden Path with GeneCards custom track
LINC00944 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00944 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00944 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00944 Gene

Proteins for LINC00944 Gene

Post-translational modifications for LINC00944 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00944 Gene

Domains & Families for LINC00944 Gene

Gene Families for LINC00944 Gene

genes like me logo Genes that share domains with LINC00944: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00944 Gene

Function for LINC00944 Gene

Phenotypes From GWAS Catalog for LINC00944 Gene

Phenotypes for LINC00944 Gene

genes like me logo Genes that share phenotypes with LINC00944: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00944 Gene

Localization for LINC00944 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00944 Gene

Pathways & Interactions for LINC00944 Gene

PathCards logo

SuperPathways for LINC00944 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00944 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00944 Gene

Drugs & Compounds for LINC00944 Gene

No Compound Related Data Available

Transcripts for LINC00944 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00944 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075AEB0_9606 lncRNA 621 4

RefSeq: NR_033878,

LncBook: HSALNT0196950,

LNCipedia: LINC00944:4,

NONCODE: NONHSAT031816.2,

URS000048CBFF_9606 lncRNA 368 4

Ensembl: ENST00000544499 (view in UCSC) ,

LncBook: HSALNT0196955,

LNCipedia: LINC00944:23,

NONCODE: NONHSAT031820.2,

URS00003221DD_9606 lncRNA 888 3

Ensembl: ENST00000540684 (view in UCSC) ,

LNCipedia: LINC00944:1,

NONCODE: NONHSAT031806.2,

URS000033EDB9_9606 lncRNA 548 3

Ensembl: ENST00000542248 (view in UCSC) ,

LNCipedia: LINC00944:2,

NONCODE: NONHSAT031827.2,

URS000011879E_9606 lncRNA 424 3

Ensembl: ENST00000536517 (view in UCSC) ,

LNCipedia: LINC00944:3,

NONCODE: NONHSAT031828.2,

LINC00944 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00944 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00944 Gene

No ASD Table

Relevant External Links for LINC00944 Gene

GeneLoc Exon Structure for
LINC00944

Expression for LINC00944 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00944 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00944 Gene

This gene is overexpressed in Testis (x21.3), Whole Blood (x6.2), and Small Intestine - Terminal Ileum (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00944

genes like me logo Genes that share expression patterns with LINC00944: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00944 Gene

Orthologs for LINC00944 Gene

Evolution for LINC00944 Gene

ENSEMBL:
Gene Tree for LINC00944 (if available)
TreeFam:
Gene Tree for LINC00944 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00944

No data available for Orthologs for LINC00944 Gene

Paralogs for LINC00944 Gene

No data available for Paralogs for LINC00944 Gene

Variants for LINC00944 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00944 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00944 Gene

Variant ID Type Subtype PubMed ID
dgv1570n100 CNV gain 25217958
dgv1573n100 CNV gain 25217958
esv3631085 CNV loss 21293372
esv3631088 CNV loss 21293372
nsv1043188 CNV gain 25217958
nsv1122784 CNV deletion 24896259
nsv515762 CNV gain+loss 19592680
nsv560620 CNV gain 21841781
nsv952501 CNV deletion 24416366

Additional Variant Information for LINC00944 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00944
Leiden Open Variation Database (LOVD)
LINC00944

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00944 Gene

Disorders for LINC00944 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00944 Gene - From: COP

Disorder Aliases PubMed IDs
darier-white disease
  • dar
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00944

genes like me logo Genes that share disorders with LINC00944: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00944 Gene

Publications for LINC00944 Gene

  1. Immune-related IncRNA LINC00944 responds to variations in ADAR1 levels and it is associated with breast cancer prognosis. (PMID: 33383047) de Santiago PR … Armisén R (Life sciences 2021) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00944 Gene

Sources for LINC00944 Gene