Aliases for LINC00944 Gene

Subcategory (RNA class) for LINC00944 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00944 Gene

  • Long Intergenic Non-Protein Coding RNA 944 2 3 5
  • LINC00944 2 170
  • HSALNG0094964 169
  • NONHSAG012695 94

External Ids for LINC00944 Gene

Previous GeneCards Identifiers for LINC00944 Gene

  • GC12M127218

Summaries for LINC00944 Gene

GeneCards Summary for LINC00944 Gene

LINC00944 (Long Intergenic Non-Protein Coding RNA 944) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00944 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00944 Gene

Genomics for LINC00944 Gene

GeneHancer (GH) Regulatory Elements for LINC00944 Gene

Promoters and enhancers for LINC00944 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J126771 Promoter/Enhancer 1.2 Ensembl ENCODE 765.2 +0.6 561 2.7 SP1 ZBTB40 SMARCE1 CC2D1A ETV6 ELF1 RELA L3MBTL2 MNT TEAD4 LINC00944 lnc-DHX37-28
GH12J126734 Enhancer 0.6 Ensembl ENCODE 7.9 +37.9 37918 1.2 RFX1 POLR2A BMI1 LINC00944 LINC00943 piR-38351-122
GH12J126767 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.6 +4.3 4274 2.5 ZNF680 RUNX3 BATF ATF2 LINC00944 lnc-DHX37-28
GH12J126784 Enhancer 0.6 ENCODE 0.4 -12.0 -11991 0.1 CTCF MYC L3MBTL2 MAX RAD21 ARID2 REST ATF1 ZNF316 MGA LINC00944 LOC121296
GH12J126762 Enhancer 0.3 Ensembl 0.4 +9.9 9918 1.2 GABPA LINC00944 lnc-DHX37-28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00944 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00944 Gene

Genomic Locations for LINC00944 Gene
chr12:126,729,639-126,772,519
(GRCh38/hg38)
Size:
42,881 bases
Orientation:
Minus strand
chr12:127,214,333-127,256,957
(GRCh37/hg19)
Size:
42,625 bases
Orientation:
Minus strand

Genomic View for LINC00944 Gene

Genes around LINC00944 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00944 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00944 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00944 Gene

Proteins for LINC00944 Gene

Post-translational modifications for LINC00944 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00944 Gene

Domains & Families for LINC00944 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00944 Gene

Function for LINC00944 Gene

Phenotypes From GWAS Catalog for LINC00944 Gene

Phenotypes for LINC00944 Gene

genes like me logo Genes that share phenotypes with LINC00944: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00944 Gene

Localization for LINC00944 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00944 Gene

Pathways & Interactions for LINC00944 Gene

PathCards logo

SuperPathways for LINC00944 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00944 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00944 Gene

Drugs & Compounds for LINC00944 Gene

No Compound Related Data Available

Transcripts for LINC00944 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00944 Gene

No ASD Table

Relevant External Links for LINC00944 Gene

GeneLoc Exon Structure for
LINC00944
ECgene alternative splicing isoforms for
LINC00944

Expression for LINC00944 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00944 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00944 Gene

This gene is overexpressed in Testis (x21.3), Whole Blood (x6.2), and Small Intestine - Terminal Ileum (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of LINC00944 Gene:

LINC00944
genes like me logo Genes that share expression patterns with LINC00944: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00944 Gene

Orthologs for LINC00944 Gene

Evolution for LINC00944 Gene

ENSEMBL:
Gene Tree for LINC00944 (if available)
TreeFam:
Gene Tree for LINC00944 (if available)

No data available for Orthologs for LINC00944 Gene

Paralogs for LINC00944 Gene

No data available for Paralogs for LINC00944 Gene

Variants for LINC00944 Gene

Sequence variations from dbSNP and Humsavar for LINC00944 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000119677 -- 126,766,675(-) T/C intron_variant
rs1000172457 -- 126,767,051(-) C/T intron_variant
rs1000286307 -- 126,768,745(-) A/G intron_variant
rs1000316753 -- 126,760,774(-) A/C/G intron_variant
rs1000326725 -- 126,748,527(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00944 Gene

Variant ID Type Subtype PubMed ID
dgv1570n100 CNV gain 25217958
dgv1573n100 CNV gain 25217958
esv3631085 CNV loss 21293372
esv3631088 CNV loss 21293372
nsv1043188 CNV gain 25217958
nsv1122784 CNV deletion 24896259
nsv515762 CNV gain+loss 19592680
nsv560620 CNV gain 21841781
nsv952501 CNV deletion 24416366

Additional Variant Information for LINC00944 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00944

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00944 Gene

Disorders for LINC00944 Gene

Additional Disease Information for LINC00944

No disorders were found for LINC00944 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00944 Gene

Publications for LINC00944 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC00944 Gene

Sources for LINC00944 Gene