Aliases for LINC00943 Gene

Data sources for LINC00943 Gene:

RNA type for LINC00943 Gene

lncRNA

Aliases for LINC00943 Gene

External Ids for LINC00943 Gene

Previous GeneCards Identifiers for LINC00943 Gene

  • GC12P127210

Summaries for LINC00943 Gene

GeneCards Summary for LINC00943 Gene

LINC00943 (Long Intergenic Non-Protein Coding RNA 943) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00943 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00943 Gene

Genomics for LINC00943 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00943 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J126725 Promoter/Enhancer 0.6 EPDnew Ensembl 250.7 +3.1 3106 0.2 EZH2 LINC00943 piR-38351-122 LOC107984449
GH12J126737 Promoter 0.4 EPDnew 250.4 +13.6 13622 0.1 CREB1 LINC00943 piR-38351-122 LINC00944 LOC107984449
GH12J126724 Enhancer 0.2 FANTOM5 250.7 +1.0 1007 0.1 LINC00943 piR-38351-122 LOC107984449
GH12J126734 Enhancer 0.6 Ensembl ENCODE 0.4 +11.2 11189 1.2 RFX1 POLR2A BMI1 LINC00944 LINC00943 piR-38351-122 LOC107984449
GH12J126719 Enhancer 0.3 ENCODE 0.7 -3.1 -3084 1.3 PKNOX1 LINC00943 piR-61514-059 LINC02824 LOC107984449
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00943 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00943 Gene

Latest Assembly
chr12:126,723,412-126,749,027
(GRCh38/hg38)
Size:
25,616 bases
Orientation:
Plus strand

Previous Assembly
chr12:127,221,553-127,230,802
(GRCh37/hg19 by Entrez Gene)
Size:
9,250 bases
Orientation:
Plus strand

chr12:127,210,816-127,230,798
(GRCh37/hg19 by Ensembl)
Size:
19,983 bases
Orientation:
Plus strand

Genomic View for LINC00943 Gene

Genes around LINC00943 on UCSC Golden Path with GeneCards custom track
LINC00943 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00943 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00943 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00943 Gene

Proteins for LINC00943 Gene

Post-translational modifications for LINC00943 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00943 Gene

Domains & Families for LINC00943 Gene

Gene Families for LINC00943 Gene

genes like me logo Genes that share domains with LINC00943: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00943 Gene

Function for LINC00943 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00943 Gene

Localization for LINC00943 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00943 Gene

Pathways & Interactions for LINC00943 Gene

PathCards logo

SuperPathways for LINC00943 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00943 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00943 Gene

Drugs & Compounds for LINC00943 Gene

No Compound Related Data Available

Transcripts for LINC00943 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00943 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000526E91_9606 lncRNA 2815 4

Ensembl: ENST00000535544 (view in UCSC) ,

LncBook: HSALNT0196972,

LNCipedia: LINC00943:8,

NONCODE: NONHSAT031824.2,

URS0000164727_9606 lncRNA 2129 4

Ensembl: ENST00000345111 (view in UCSC) ,

LncBook: HSALNT0196973,

LNCipedia: LINC00943:9,

NONCODE: NONHSAT031825.2,

URS00005067BE_9606 lncRNA 1692 4

Ensembl: ENST00000537374 (view in UCSC) ,

LncBook: HSALNT0196910,

LNCipedia: LINC00943:1,

NONCODE: NONHSAT031803.2,

URS000007DDF1_9606 lncRNA 858 3

Ensembl: ENST00000539315 (view in UCSC) ,

LNCipedia: LINC00943:3,

NONCODE: NONHSAT031805.2,

URS000075E332_9606 lncRNA 2265 2

RefSeq: NR_038256,

LNCipedia: LINC00943:12,

LINC00943 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00943 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00943 Gene

No ASD Table

Relevant External Links for LINC00943 Gene

GeneLoc Exon Structure for
LINC00943

Expression for LINC00943 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00943 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00943 Gene

This gene is overexpressed in Testis (x31.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00943

genes like me logo Genes that share expression patterns with LINC00943: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00943 Gene

Orthologs for LINC00943 Gene

Evolution for LINC00943 Gene

ENSEMBL:
Gene Tree for LINC00943 (if available)
TreeFam:
Gene Tree for LINC00943 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00943

No data available for Orthologs for LINC00943 Gene

Paralogs for LINC00943 Gene

No data available for Paralogs for LINC00943 Gene

Variants for LINC00943 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00943 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00943 Gene

Variant ID Type Subtype PubMed ID
dgv1570n100 CNV gain 25217958
dgv1573n100 CNV gain 25217958
esv3631085 CNV loss 21293372
nsv1043188 CNV gain 25217958
nsv515762 CNV gain+loss 19592680
nsv560620 CNV gain 21841781

Additional Variant Information for LINC00943 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00943
Leiden Open Variation Database (LOVD)
LINC00943

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00943 Gene

Disorders for LINC00943 Gene

Additional Disease Information for LINC00943

No disorders were found for LINC00943 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00943 Gene

Publications for LINC00943 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00943 Gene

Sources for LINC00943 Gene