Aliases for LINC00942 Gene

Subcategory (RNA class) for LINC00942 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00942 Gene

  • Long Intergenic Non-Protein Coding RNA 942 2 3 5
  • HSALNG0088539 167
  • NONHSAG010163 92
  • Lnc-ERC1-1 168
  • LINC00942 2

External Ids for LINC00942 Gene

Previous GeneCards Identifiers for LINC00942 Gene

  • GC12P001612

Summaries for LINC00942 Gene

GeneCards Summary for LINC00942 Gene

LINC00942 (Long Intergenic Non-Protein Coding RNA 942) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00942 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00942 Gene

Genomics for LINC00942 Gene

GeneHancer (GH) Regulatory Elements for LINC00942 Gene

Promoters and enhancers for LINC00942 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J001499 Enhancer 1 Ensembl ENCODE 522.1 -0.3 -289 2 TCF12 ZNF10 ZNF263 MYC CTBP1 TAF9B NCOR1 NFRKB KDM5B ZNF316 LINC00942 WNT5B ENSG00000249028 LINC00942-001 lnc-WNT5B-3
GH12J001501 Enhancer 0.6 Ensembl ENCODE 521 +1.8 1834 1.5 ZNF341 ZNF316 NFIC TRIM28 CTCF TRIM24 LINC00942 WNT5B ENSG00000249028 LINC00942-001
GH12J000989 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 9.7 -509.2 -509232 5.5 ZNF217 EP300 ZSCAN5C TCF12 POLR2G GTF2E2 PHF8 ZFX CTCF ZNF639 RAD52 ERC1 ENSG00000250132 WASH8P KDM5A CCDC77 ENSG00000261799 LINC00942 WNT5B lnc-WNK1-3
GH12J001992 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 13.6 +493.9 493882 3.2 POLR2G NCOR1 RBAK JUND FOS EP300 KDM6A SKI TEAD1 ZEB1 CBX3P4 LINC00942 IQSEC3P1 DCP1B FBXL14 CACNA1C
GH12J001604 Enhancer 1.4 ENCODE CraniofacialAtlas dbSUPER 9.9 +105.3 105300 2.8 ZNF217 CTCF ZSCAN5C ZNF300 USF1 BCLAF1 JUND TEAD4 FOS ZNF639 RAD52 DCP1B ENSG00000250132 WNT5B LINC00942 ERC1 lnc-ADIPOR2-3 FBXL14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00942 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00942 Gene

Genomic Locations for LINC00942 Gene
chr12:1,500,490-1,512,009
(GRCh38/hg38)
Size:
11,520 bases
Orientation:
Plus strand
chr12:1,609,657-1,613,590
(GRCh37/hg19)
Size:
3,934 bases
Orientation:
Plus strand

Genomic View for LINC00942 Gene

Genes around LINC00942 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00942 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00942 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00942 Gene

Proteins for LINC00942 Gene

Post-translational modifications for LINC00942 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00942 Gene

Domains & Families for LINC00942 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00942 Gene

Function for LINC00942 Gene

Phenotypes From GWAS Catalog for LINC00942 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00942 Gene

Localization for LINC00942 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00942 Gene

Pathways & Interactions for LINC00942 Gene

PathCards logo

SuperPathways for LINC00942 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00942 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00942 Gene

Drugs & Compounds for LINC00942 Gene

No Compound Related Data Available

Transcripts for LINC00942 Gene

mRNA/cDNA for LINC00942 Gene

10 RNACentral transcripts :
1 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
1 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00942 Gene

No ASD Table

Relevant External Links for LINC00942 Gene

GeneLoc Exon Structure for
LINC00942

Expression for LINC00942 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00942 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00942

genes like me logo Genes that share expression patterns with LINC00942: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00942 Gene

Orthologs for LINC00942 Gene

Evolution for LINC00942 Gene

ENSEMBL:
Gene Tree for LINC00942 (if available)
TreeFam:
Gene Tree for LINC00942 (if available)

No data available for Orthologs for LINC00942 Gene

Paralogs for LINC00942 Gene

No data available for Paralogs for LINC00942 Gene

Variants for LINC00942 Gene

Additional dbSNP identifiers (rs#s) for LINC00942 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00942 Gene

Variant ID Type Subtype PubMed ID
dgv1337n100 CNV loss 25217958
nsv556950 CNV loss 21841781

Additional Variant Information for LINC00942 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00942

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00942 Gene

Disorders for LINC00942 Gene

Additional Disease Information for LINC00942

No disorders were found for LINC00942 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00942 Gene

Publications for LINC00942 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC00942 Gene

Sources for LINC00942 Gene