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Aliases for LINC00941 Gene
Data sources for LINC00941 Gene:
Subcategory (RNA class) for LINC00941 Gene
lncRNA
Aliases for LINC00941 Gene
- Long Intergenic Non-Protein Coding RNA 941 (HGNC, NCBI Entrez Gene, Ensembl)
- MSC Upregulated Factor (HGNC, NCBI Entrez Gene)
- LncRNA-MUF (HGNC, NCBI Entrez Gene)
- LINC00941 (Ensembl, LNCipedia)
- NONHSAG010792.2 (NONCODE)
- HSALNG0090150 (LncBook)
- HSALNG0090149 (LncBook)
External Ids for LINC00941 Gene
- HGNC: 48635
- NCBI Entrez Gene: 100287314
- Ensembl: ENSG00000235884
Previous GeneCards Identifiers for LINC00941 Gene
- GC12P030949
- GC12P030795
Summaries for LINC00941 Gene
GeneCards Summary for LINC00941 Gene
LINC00941 (Long Intergenic Non-Protein Coding RNA 941) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00941 include Lung Cancer Susceptibility 3 and Gastric Cancer.
Additional gene information for LINC00941 Gene
- HGNC (48635)
- NCBI Entrez Gene (100287314)
- Ensembl (ENSG00000235884)
- Open Targets Platform(ENSG00000235884)
- Search for LINC00941 at DataMed
- Search for LINC00941 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00941 Gene
Genomics for LINC00941 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00941 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00941 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00941 Gene
Latest Assembly
- chr12:30,755,167-30,817,915
- (GRCh38/hg38)
- Size:
- 62,749 bases
- Orientation:
- Plus strand
Previous Assembly
- chr12:30,948,615-30,955,645
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 7,031 bases
- Orientation:
- Plus strand
- chr12:30,947,977-30,955,645
- (GRCh37/hg19 by Ensembl)
- Size:
- 7,669 bases
- Orientation:
- Plus strand
Genomic View for LINC00941 Gene
Genes around LINC00941 on UCSC Golden Path with GeneCards custom track
LINC00941 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12p11.21 by HGNC
- 12p11.21 by Entrez Gene
- 12p11.21 by Ensembl
LINC00941 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00941 Gene
Proteins for LINC00941 Gene
Post-translational modifications for LINC00941 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC00941 Gene
Domains & Families for LINC00941 Gene
Gene Families for LINC00941 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00941 Gene
Function for LINC00941 Gene
Phenotypes From GWAS Catalog for LINC00941 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00941 Gene
Localization for LINC00941 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| cytoskeleton | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00941 Gene
Transcripts for LINC00941 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00941 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075A607_9606 | lncRNA | 1900 | 4 |
RefSeq: NR_040245, LncBook: HSALNT0187302, LNCipedia: LINC00941:3, NONCODE: NONHSAT027515.2, |
| URS0000DB7D47_9606 | lncRNA | 1355 | 1 |
Ensembl: ENST00000650286 (view in UCSC) , |
| URS00008BE212_9606 | lncRNA | 3148 | 3 |
LncBook: HSALNT0187303, LNCipedia: LINC00941:4, NONCODE: NONHSAT027516.2, |
| URS00008B6C97_9606 | lncRNA | 929 | 3 |
LncBook: HSALNT0187312, LNCipedia: LINC00941:7, NONCODE: NONHSAT027518.2, |
| URS00008B2A93_9606 | lncRNA | 923 | 3 |
LncBook: HSALNT0187307, LNCipedia: LINC00941:6, NONCODE: NONHSAT027517.2, |
LINC00941 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00941 Gene
- 3 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC00941 Gene
- GeneLoc Exon Structure for
- LINC00941
Expression for LINC00941 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00941
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00941 Gene
Orthologs for LINC00941 Gene
No data available for Orthologs for LINC00941 Gene
Paralogs for LINC00941 Gene
No data available for Paralogs for LINC00941 Gene
Variants for LINC00941 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2422447 | CNV | duplication | 17116639 |
| esv34091 | CNV | loss | 18971310 |
| esv3581161 | CNV | gain | 25503493 |
| nsv657 | CNV | insertion | 18451855 |
| nsv832361 | CNV | loss | 17160897 |
Additional Variant Information for LINC00941 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00941
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00941 Gene
Disorders for LINC00941 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| lung cancer susceptibility 3 |
|
|
| gastric cancer |
|
|
| hepatocellular carcinoma |
|
Search LINC00941 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC00941
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00941 Gene
Publications for LINC00941 Gene
- Mesenchymal Stem Cells Promote Hepatocarcinogenesis via lncRNA-MUF Interaction with ANXA2 and miR-34a. (PMID: 28947421) Yan X … Fan Z (Cancer research 2017) 2 3 74
- The long non-coding RNA LINC00941 and SPRR5 are novel regulators of human epidermal homeostasis. (PMID: 30622217) Ziegler C … Kretz M (EMBO reports 2019) 2 3
- Regulatory network analysis of high expressed long non-coding RNA LINC00941 in gastric cancer. (PMID: 29653230) Luo C … Liao Q (Gene 2018) 3 74
- Systematic identification of lincRNA-based prognostic biomarkers by integrating lincRNA expression and copy number variation in lung adenocarcinoma. (PMID: 30226269) Wang L … Zhang Y (International journal of cancer 2019) 3
- Development of a RNA-Seq Based Prognostic Signature in Lung Adenocarcinoma. (PMID: 27707839) Shukla S … Chinnaiyan AM (Journal of the National Cancer Institute 2017) 74
Products for LINC00941 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00941
- Origene Custom Protein Services for LINC00941
- Browse OriGene Inhibitory RNA Products For LINC00941
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC00941
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00941
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
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- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC00941
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC00941
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00941
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC00941
Sources for LINC00941 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB