Aliases for LINC00941 Gene

Subcategory (RNA class) for LINC00941 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00941 Gene

  • Long Intergenic Non-Protein Coding RNA 941 2 3 5
  • LINC00941 2 5 165
  • MSC Upregulated Factor 2 3
  • LncRNA-MUF 2 3
  • NONHSAG010792.2 91
  • HSALNG0090150 164

External Ids for LINC00941 Gene

Previous GeneCards Identifiers for LINC00941 Gene

  • GC12P030949
  • GC12P030795

Summaries for LINC00941 Gene

GeneCards Summary for LINC00941 Gene

LINC00941 (Long Intergenic Non-Protein Coding RNA 941) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00941 include Lung Cancer Susceptibility 3 and Gastric Cancer.

Additional gene information for LINC00941 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00941 Gene

Genomics for LINC00941 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00941 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00941 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00941 Gene

Genomic Locations for LINC00941 Gene
chr12:30,755,167-30,817,915
(GRCh38/hg38)
Size:
62,749 bases
Orientation:
Plus strand
chr12:30,947,977-30,955,645
(GRCh37/hg19)
Size:
7,669 bases
Orientation:
Plus strand

Genomic View for LINC00941 Gene

Genes around LINC00941 on UCSC Golden Path with GeneCards custom track
LINC00941 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00941 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00941 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00941 Gene

Proteins for LINC00941 Gene

Post-translational modifications for LINC00941 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00941 Gene

Domains & Families for LINC00941 Gene

Gene Families for LINC00941 Gene

genes like me logo Genes that share domains with LINC00941: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00941 Gene

Function for LINC00941 Gene

Phenotypes From GWAS Catalog for LINC00941 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00941 Gene

Localization for LINC00941 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00941 gene
Compartment Confidence
extracellular 1
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00941 Gene

Pathways & Interactions for LINC00941 Gene

PathCards logo

SuperPathways for LINC00941 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00941 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00941 Gene

Drugs & Compounds for LINC00941 Gene

No Compound Related Data Available

Transcripts for LINC00941 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00941 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A607_9606 lncRNA 1895 5

HGNC: 48635,

RefSeq: NR_040245,

LncBook: HSALNT0187302,

LNCipedia: LINC00941:3,

NONCODE: NONHSAT027515.2,

URS0000DB7D47_9606 lncRNA 1355 1

Ensembl: ENST00000650286 (view in UCSC) ,

URS00008BE212_9606 lncRNA 3148 3

LncBook: HSALNT0187303,

LNCipedia: LINC00941:4,

NONCODE: NONHSAT027516.2,

URS00008B6C97_9606 lncRNA 929 3

LncBook: HSALNT0187312,

LNCipedia: LINC00941:7,

NONCODE: NONHSAT027518.2,

URS00008B2A93_9606 lncRNA 919 3

LncBook: HSALNT0187307,

LNCipedia: LINC00941:6,

NONCODE: NONHSAT027517.2,

LINC00941 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00941 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00941 Gene

No ASD Table

Relevant External Links for LINC00941 Gene

GeneLoc Exon Structure for
LINC00941

Expression for LINC00941 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00941 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00941

genes like me logo Genes that share expression patterns with LINC00941: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00941 Gene

Orthologs for LINC00941 Gene

Evolution for LINC00941 Gene

ENSEMBL:
Gene Tree for LINC00941 (if available)
TreeFam:
Gene Tree for LINC00941 (if available)

No data available for Orthologs for LINC00941 Gene

Paralogs for LINC00941 Gene

No data available for Paralogs for LINC00941 Gene

Variants for LINC00941 Gene

Additional dbSNP identifiers (rs#s) for LINC00941 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00941 Gene

Variant ID Type Subtype PubMed ID
esv2422447 CNV duplication 17116639
esv34091 CNV loss 18971310
esv3581161 CNV gain 25503493
nsv657 CNV insertion 18451855
nsv832361 CNV loss 17160897

Additional Variant Information for LINC00941 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00941

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00941 Gene

Disorders for LINC00941 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC00941 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
lung cancer susceptibility 3
  • lncr3
gastric cancer
  • gastric cancer, somatic
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC00941: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00941 Gene

Publications for LINC00941 Gene

  1. The long non-coding RNA LINC00941 and SPRR5 are novel regulators of human epidermal homeostasis. (PMID: 30622217) Ziegler C … Kretz M (EMBO reports 2019) 2 3
  2. Mesenchymal Stem Cells Promote Hepatocarcinogenesis via lncRNA-MUF Interaction with ANXA2 and miR-34a. (PMID: 28947421) Yan X … Fan Z (Cancer research 2017) 2 3
  3. Systematic identification of lincRNA-based prognostic biomarkers by integrating lincRNA expression and copy number variation in lung adenocarcinoma. (PMID: 30226269) Wang L … Zhang Y (International journal of cancer 2019) 3
  4. Regulatory network analysis of high expressed long non-coding RNA LINC00941 in gastric cancer. (PMID: 29653230) Luo C … Liao Q (Gene 2018) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for LINC00941 Gene

Sources for LINC00941 Gene