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Aliases for LINC00937 Gene

Subcategory (RNA class) for LINC00937 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00937 Gene

  • Long Intergenic Non-Protein Coding RNA 937 2 3 5

External Ids for LINC00937 Gene

Previous GeneCards Identifiers for LINC00937 Gene

  • GC12M008452

Summaries for LINC00937 Gene

GeneCards Summary for LINC00937 Gene

LINC00937 (Long Intergenic Non-Protein Coding RNA 937) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC00937 include Skin Melanoma.

Additional gene information for LINC00937 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00937 Gene

Genomics for LINC00937 Gene

GeneHancer (GH) Regulatory Elements for LINC00937 Gene

Promoters and enhancers for LINC00937 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J008396 Promoter 0.9 Ensembl 655.9 +0.1 102 0.2 SMARCA5 CTCF ZNF777 RB1 NRF1 TRIM22 REST RAD21 ZNF560 ZNF335 LINC00937 ENSG00000284673
GH12J008492 Enhancer 1.1 FANTOM5 Ensembl ENCODE 7 -96.3 -96335 1.5 EBF1 BATF IRF4 RELA POLR2A NFATC1 ETV6 IKZF2 RUNX3 CREM CLEC4E CLEC4D CLEC6A CLEC4A LINC00937 NECAP1 KLRG1 C3AR1 M6PR FOXJ2
GH12J008319 Enhancer 0.7 Ensembl ENCODE 8.4 +76.5 76454 2 ZNF316 RFX1 MAFG ELF1 MLLT1 EMSY LOC101927966 ENSG00000256552 PIR31718 ENSG00000256101 LINC00937
GH12J009363 Enhancer 1.1 Ensembl ENCODE 4.5 -968.2 -968228 2.5 PKNOX1 SMAD1 DMAP1 IRF4 ZNF48 ATF7 FOS RUNX3 GTF2B JUNB PIR61151 PIR43642 PIR50327 PIR46832 GC12P009782 GC12P009771 GC12M012301 PIR37363 PIR44256 PIR36051
GH12J008539 Promoter/Enhancer 0.7 EPDnew Ensembl 7 -143.8 -143798 2.8 CLEC4E LINC00937 GC12P008530
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00937 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00937 Gene

Genomic Locations for LINC00937 Gene
chr12:8,295,986-8,396,803
(GRCh38/hg38)
Size:
100,818 bases
Orientation:
Minus strand
chr12:8,448,582-8,549,399
(GRCh37/hg19)
Size:
100,818 bases
Orientation:
Minus strand

Genomic View for LINC00937 Gene

Genes around LINC00937 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00937 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00937 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00937 Gene

Proteins for LINC00937 Gene

Post-translational modifications for LINC00937 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00937 Gene

Domains & Families for LINC00937 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00937 Gene

Function for LINC00937 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00937

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00937 Gene

Localization for LINC00937 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00937 Gene

Pathways & Interactions for LINC00937 Gene

SuperPathways for LINC00937 Gene

No Data Available

Interacting Proteins for LINC00937 Gene

Gene Ontology (GO) - Biological Process for LINC00937 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00937 Gene

Drugs & Compounds for LINC00937 Gene

No Compound Related Data Available

Transcripts for LINC00937 Gene

mRNA/cDNA for LINC00937 Gene

(1) REFSEQ mRNAs :
(10) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00937

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00937 Gene

No ASD Table

Relevant External Links for LINC00937 Gene

GeneLoc Exon Structure for
LINC00937
ECgene alternative splicing isoforms for
LINC00937

Expression for LINC00937 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00937 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00937 Gene

This gene is overexpressed in Whole Blood (x23.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC00937 Gene:

LINC00937
genes like me logo Genes that share expression patterns with LINC00937: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00937 Gene

Orthologs for LINC00937 Gene

Evolution for LINC00937 Gene

ENSEMBL:
Gene Tree for LINC00937 (if available)
TreeFam:
Gene Tree for LINC00937 (if available)

No data available for Orthologs for LINC00937 Gene

Paralogs for LINC00937 Gene

No data available for Paralogs for LINC00937 Gene

Variants for LINC00937 Gene

Sequence variations from dbSNP and Humsavar for LINC00937 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000127149 -- 8,391,739(-) T/C upstream_transcript_variant
rs1000190539 -- 8,365,820(-) C/A intron_variant
rs1000382938 -- 8,360,507(-) T/C intron_variant
rs1000531569 -- 8,375,526(-) A/G intron_variant
rs1000545284 -- 8,389,329(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00937 Gene

Variant ID Type Subtype PubMed ID
nsv983380 CNV duplication 23825009
nsv973138 CNV duplication 23825009
nsv973137 CNV duplication 23825009
nsv973015 CNV duplication 23825009
nsv8900 CNV gain+loss 18304495
nsv598 CNV deletion 18451855
nsv508664 CNV deletion 20534489
nsv428270 CNV gain 18775914
nsv1159961 CNV deletion 26073780
nsv1041032 CNV gain+loss 25217958
nsv1035313 CNV gain 25217958
esv3628464 CNV loss 21293372
esv29886 CNV gain+loss 19812545
esv2760766 CNV gain 21179565
esv2759877 CNV gain+loss 17122850
esv2745498 CNV deletion 23290073
esv2557795 CNV loss 19546169
esv2477755 CNV loss 19546169
dgv62n111 CNV deletion 26073780
dgv248e214 CNV gain 21293372
dgv2339n54 CNV gain 21841781
dgv1365n100 CNV gain 25217958
dgv1364n100 CNV gain+loss 25217958
dgv1363n100 CNV gain 25217958
dgv1362n100 CNV gain 25217958
dgv1361n100 CNV gain 25217958
dgv1360n100 CNV gain 25217958
dgv1358n100 CNV gain 25217958

Additional Variant Information for LINC00937 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00937

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00937 Gene

Disorders for LINC00937 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00937 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
skin melanoma
  • melanoma, cutaneous malignant
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00937

genes like me logo Genes that share disorders with LINC00937: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00937 Gene

Publications for LINC00937 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00937 Gene

Sources for LINC00937 Gene

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