Aliases for LINC00934 Gene

Data sources for LINC00934 Gene:

RNA type for LINC00934 Gene

lncRNA

Aliases for LINC00934 Gene

External Ids for LINC00934 Gene

Previous GeneCards Identifiers for LINC00934 Gene

  • GC12M119723

Summaries for LINC00934 Gene

GeneCards Summary for LINC00934 Gene

LINC00934 (Long Intergenic Non-Protein Coding RNA 934) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00934 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00934 Gene

Genomics for LINC00934 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00934 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J119302 Promoter/Enhancer 1 EPDnew Ensembl ENCODE 250.7 +0.6 563 1.2 RAD51 ZNF384 USF2 ZNF512 USF1 EZH2 LINC00934 LOC105370024 lnc-CIT-9 CCDC60 HSPB8
GH12J119308 Enhancer 0.6 Ensembl ENCODE CraniofacialAtlas 0.4 -5.7 -5721 1 PRDM1 LINC00934 CCDC60 HSPB8
GH12J119336 Promoter/Enhancer 0.8 EPDnew Ensembl 0.3 -31.3 -31263 0.5 SIN3A TAF1 RFX1 SP1 NR2C1 CHD2 CCDC60 NONHSAG012483.2 LINC00934 HSPB8
GH12J119274 Enhancer 0.5 Ensembl ENCODE 0.3 +28.7 28679 1 RAD21 CTCF lnc-CIT-9 HSPB8 LOC105370024 LINC00934 CCDC60
GH12J119328 Enhancer 0.4 Ensembl 0.3 -25.1 -25120 0.2 RAD21 CTCF ZNF143 CCDC60 LINC00934 HSPB8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00934 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00934 Gene

Latest Assembly
chr12:119,283,824-119,303,380
(GRCh38/hg38)
Size:
19,557 bases
Orientation:
Minus strand

Previous Assembly
chr12:119,721,630-119,741,185
(GRCh37/hg19 by Entrez Gene)
Size:
19,556 bases
Orientation:
Minus strand

Genomic View for LINC00934 Gene

Genes around LINC00934 on UCSC Golden Path with GeneCards custom track
LINC00934 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00934 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00934 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00934 Gene

Proteins for LINC00934 Gene

Post-translational modifications for LINC00934 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00934 Gene

Domains & Families for LINC00934 Gene

Gene Families for LINC00934 Gene

genes like me logo Genes that share domains with LINC00934: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00934 Gene

Function for LINC00934 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00934 Gene

Localization for LINC00934 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00934 Gene

Pathways & Interactions for LINC00934 Gene

PathCards logo

SuperPathways for LINC00934 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00934 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00934 Gene

Drugs & Compounds for LINC00934 Gene

No Compound Related Data Available

Transcripts for LINC00934 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00934 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075C589_9606 lncRNA 2291 5

RefSeq: NR_024246,

Ensembl: ENST00000630357 (view in UCSC) ,

LncBook: HSALNT0195853,

LNCipedia: LINC00934:6,

NONCODE: NONHSAT031077.2,

URS0000811D17_9606 lncRNA 863 3

Ensembl: ENST00000628559 (view in UCSC) ,

LNCipedia: LINC00934:8,

NONCODE: NONHSAT164093.1,

URS00008B627E_9606 lncRNA 411 3

LncBook: HSALNT0195854,

LNCipedia: LINC00934:7,

NONCODE: NONHSAT031078.2,

URS0001BF81C8_9606 lncRNA 2291 1

LncBook: HSALNT0195853,

URS00008B7025_9606 lncRNA 682 1

LNCipedia: LINC00934:9,

LINC00934 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00934 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00934 Gene

No ASD Table

Relevant External Links for LINC00934 Gene

GeneLoc Exon Structure for
LINC00934

Expression for LINC00934 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00934

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00934 Gene

Orthologs for LINC00934 Gene

Evolution for LINC00934 Gene

ENSEMBL:
Gene Tree for LINC00934 (if available)
TreeFam:
Gene Tree for LINC00934 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00934

No data available for Orthologs for LINC00934 Gene

Paralogs for LINC00934 Gene

No data available for Paralogs for LINC00934 Gene

Variants for LINC00934 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00934 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00934 Gene

Variant ID Type Subtype PubMed ID
esv2746458 CNV deletion 23290073
nsv455726 CNV loss 19166990
nsv560396 CNV loss 21841781
nsv832528 CNV gain 17160897

Additional Variant Information for LINC00934 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00934
Leiden Open Variation Database (LOVD)
LINC00934

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00934 Gene

Disorders for LINC00934 Gene

Additional Disease Information for LINC00934

No disorders were found for LINC00934 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00934 Gene

Publications for LINC00934 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC00934 Gene

Products for LINC00934 Gene

Sources for LINC00934 Gene