Aliases for LINC00923 Gene

Subcategory (RNA class) for LINC00923 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00923 Gene

  • Long Intergenic Non-Protein Coding RNA 923 2 3 5
  • LINC00923 2 5 165
  • NONHSAG018037.2 91
  • HSALNG0108458 164

External Ids for LINC00923 Gene

Previous GeneCards Identifiers for LINC00923 Gene

  • GC15M098287
  • GC15M098377
  • GC15M097635
  • GC15M097639
  • GC15M099523
  • GC15M100485
  • GC15M100752
  • GC15M102787
  • GC15M097673
  • GC15M097772
  • GC15M098202
  • GC15M098557
  • GC15M098732
  • GC15M098894
  • GC15M099176
  • GC15M099413

Summaries for LINC00923 Gene

GeneCards Summary for LINC00923 Gene

LINC00923 (Long Intergenic Non-Protein Coding RNA 923) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00923 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00923 Gene

Genomics for LINC00923 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00923 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J097875 Promoter/Enhancer 1.2 Ensembl ENCODE 600.7 +0.2 249 1.6 CTCF RBFOX2 ZNF24 HDAC1 SOX6 ZFX NRF1 NONO MGA GTF2E2 ENSG00000259870 LINC00923 piR-40348-016 ARRDC4 piR-33303-071
GH15J097728 Enhancer 0.5 Ensembl ENCODE 6.4 +146.6 146649 1.2 PKNOX1 SMARCA4 LINC00923 piR-30371 piR-33422-159 ARRDC4
GH15J097684 Enhancer 0.4 Ensembl 5.5 +191.1 191104 0.5 PKNOX1 SPI1 POLR2A LINC00923 lnc-ARRDC4-8 piR-59928-057 ARRDC4
GH15J097767 Enhancer 0.2 Ensembl 5.9 +107.8 107849 0.4 LINC00923 piR-33303-071 ARRDC4
GH15J097712 Enhancer 0.2 ENCODE 5.8 +163.0 163046 1.1 LINC00923 piR-30371 lnc-ARRDC4-8 ARRDC4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00923 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00923 Gene

Genomic Locations for LINC00923 Gene
chr15:97,572,185-97,875,650
(GRCh38/hg38)
Size:
303,466 bases
Orientation:
Minus strand
chr15:98,285,448-98,417,780
(GRCh37/hg19)
Size:
132,333 bases
Orientation:
Minus strand

Genomic View for LINC00923 Gene

Genes around LINC00923 on UCSC Golden Path with GeneCards custom track
LINC00923 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00923 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00923 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00923 Gene

Proteins for LINC00923 Gene

Post-translational modifications for LINC00923 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00923 Gene

Domains & Families for LINC00923 Gene

Gene Families for LINC00923 Gene

genes like me logo Genes that share domains with LINC00923: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00923 Gene

Function for LINC00923 Gene

Phenotypes From GWAS Catalog for LINC00923 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00923 Gene

Localization for LINC00923 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00923 Gene

Pathways & Interactions for LINC00923 Gene

PathCards logo

SuperPathways for LINC00923 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00923 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00923 Gene

Drugs & Compounds for LINC00923 Gene

No Compound Related Data Available

Transcripts for LINC00923 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00923 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000077D291_9606 lncRNA 1181 4

Ensembl: ENST00000614972 (view in UCSC) ,

LncBook: HSALNT0225541,

LNCipedia: LINC00923:2,

NONCODE: NONHSAT172020.1,

URS000076FEF3_9606 lncRNA 932 4

Ensembl: ENST00000615399 (view in UCSC) ,

LncBook: HSALNT0225523,

LNCipedia: LINC00923:8,

NONCODE: NONHSAT172013.1,

URS000078560C_9606 lncRNA 505 4

Ensembl: ENST00000619015 (view in UCSC) ,

LncBook: HSALNT0225540,

LNCipedia: LINC00923:9,

NONCODE: NONHSAT172019.1,

URS0000781258_9606 lncRNA 503 4

Ensembl: ENST00000621777 (view in UCSC) ,

LncBook: HSALNT0225533,

LNCipedia: LINC00923:11,

NONCODE: NONHSAT172015.1,

URS000077BE2A_9606 lncRNA 359 4

Ensembl: ENST00000558179 (view in UCSC) ,

LncBook: HSALNT0225552,

LNCipedia: LINC00923:7,

NONCODE: NONHSAT050745.2,

LINC00923 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00923 Gene

5 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00923 Gene

No ASD Table

Relevant External Links for LINC00923 Gene

GeneLoc Exon Structure for
LINC00923

Expression for LINC00923 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00923 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00923 Gene

This gene is overexpressed in Testis (x8.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00923

genes like me logo Genes that share expression patterns with LINC00923: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00923 Gene

Orthologs for LINC00923 Gene

Evolution for LINC00923 Gene

ENSEMBL:
Gene Tree for LINC00923 (if available)
TreeFam:
Gene Tree for LINC00923 (if available)

No data available for Orthologs for LINC00923 Gene

Paralogs for LINC00923 Gene

No data available for Paralogs for LINC00923 Gene

Variants for LINC00923 Gene

Additional dbSNP identifiers (rs#s) for LINC00923 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00923 Gene

Variant ID Type Subtype PubMed ID
dgv760e212 CNV loss 25503493
esv3307423 CNV mobile element insertion 20981092
esv3322482 CNV insertion 20981092
esv3417371 CNV insertion 20981092
esv3581845 CNV loss 25503493
esv3581846 CNV loss 25503493
esv3581848 CNV loss 25503493
esv3581850 CNV loss 25503493
esv3637385 CNV loss 21293372
nsv1683 CNV insertion 18451855
nsv457277 CNV loss 19166990
nsv515565 CNV loss 19592680
nsv519913 CNV gain 19592680
nsv524601 CNV loss 19592680
nsv525666 CNV gain 19592680
nsv570641 CNV loss 21841781

Variation tolerance for LINC00923 Gene

Gene Damage Index Score: 1.00; 20.64% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC00923 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00923

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC00923 Gene

Disorders for LINC00923 Gene

No disorders were found for LINC00923 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00923 Gene

Publications for LINC00923 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00923 Gene

Sources for LINC00923 Gene