Aliases for LINC00921 Gene

Subcategory (RNA class) for LINC00921 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00921 Gene

  • Long Intergenic Non-Protein Coding RNA 921 2 3 5
  • LINC00921 2 5 165
  • NONHSAG018400.2 91
  • HSALNG0109143 164
  • FLJ39639 2

External Ids for LINC00921 Gene

Previous GeneCards Identifiers for LINC00921 Gene

  • GC16P003316
  • GC16P003270
  • GC16P003773
  • GC16P003851
  • GC16P003901
  • GC16P004076
  • GC16P003297
  • GC16P003332
  • GC16P003387
  • GC16P003402
  • GC16P003450
  • GC16P003483
  • GC16P003571
  • GC16P003617

Summaries for LINC00921 Gene

GeneCards Summary for LINC00921 Gene

LINC00921 (Long Intergenic Non-Protein Coding RNA 921) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00921 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00921 Gene

Genomics for LINC00921 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00921 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J003262 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.2 199 2.9 RNF2 SP1 CREB1 GATAD2A PRDM10 ZNF629 TFE3 LEF1 IKZF1 POLR2A ZNF263 LINC00921 ZNF75A ZNF205 ENSG00000261938 ZNF213-AS1 ERVK13-1 SRRM2 CREBBP ENSG00000262482
GH16J003258 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -4.2 -4246 2.6 GATAD2A SP1 CEBPA CEBPB SMARCC1 CREB1 GABPA MAX EP300 SAP130 lnc-ZNF263-4 MEFV MMP25 ZNF200 ZNF263 OR2C1 TIGD7 ZNF75A PRSS33 NAA60
GH16J003266 Enhancer 0.6 dbSUPER 0.7 +3.7 3666 0.7 GATAD2A CTCF PKNOX1 PBX2 CBX3 SMC3 RAD21 ZNF189 THAP11 ZNF2 piR-50444-139 TIGD7 ZNF75A ZNF200 ZNF597 NAA60 ZNF174 ZSCAN32 OR2C1 ZNF263
GH16J003267 Enhancer 0.3 dbSUPER 0.7 +4.6 4580 1 FOXP1 piR-50444-139 ZNF75A TIGD7 ZNF200 ZNF597 NAA60 ZNF174 ZSCAN32 OR2C1 LINC00921
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00921 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00921 Gene

Genomic Locations for LINC00921 Gene
chr16:3,263,743-3,267,839
(GRCh38/hg38)
Size:
4,097 bases
Orientation:
Plus strand
chr16:3,313,743-3,351,401
(GRCh37/hg19)
Size:
37,659 bases
Orientation:
Plus strand

Genomic View for LINC00921 Gene

Genes around LINC00921 on UCSC Golden Path with GeneCards custom track
LINC00921 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00921 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00921 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00921 Gene

Proteins for LINC00921 Gene

Post-translational modifications for LINC00921 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00921 Gene

Domains & Families for LINC00921 Gene

Gene Families for LINC00921 Gene

Suggested Antigen Peptide Sequences for LINC00921 Gene

GenScript: Design optimal peptide antigens:
  • FLJ39639 protein (Q2M3D8_HUMAN)
genes like me logo Genes that share domains with LINC00921: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00921 Gene

Function for LINC00921 Gene

Phenotypes From GWAS Catalog for LINC00921 Gene

genes like me logo Genes that share phenotypes with LINC00921: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00921 Gene

Localization for LINC00921 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00921 Gene

Pathways & Interactions for LINC00921 Gene

PathCards logo

SuperPathways for LINC00921 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00921 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00921 Gene

Drugs & Compounds for LINC00921 Gene

No Compound Related Data Available

Transcripts for LINC00921 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00921 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000811C79_9606 lncRNA 243 4

Ensembl: ENST00000572123 (view in UCSC) ,

LncBook: HSALNT0226917,

LNCipedia: LINC00921:5,

NONCODE: NONHSAT148018.2,

URS000081174E_9606 lncRNA 2468 3

Ensembl: ENST00000573951 (view in UCSC) ,

LNCipedia: LINC00921:1,

NONCODE: NONHSAT148015.2,

URS000075AD3E_9606 lncRNA 2443 3

HGNC: 26830,

RefSeq: NR_033904,

LNCipedia: LINC00921:7,

URS00008B58A9_9606 lncRNA 969 3

LncBook: HSALNT0226915,

LNCipedia: LINC00921:3,

NONCODE: NONHSAT148016.2,

URS00008B861B_9606 lncRNA 4050 2

LNCipedia: LINC00921:4,

NONCODE: NONHSAT148017.2,

LINC00921 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00921 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00921 Gene

No ASD Table

Relevant External Links for LINC00921 Gene

GeneLoc Exon Structure for
LINC00921

Expression for LINC00921 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00921

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00921 Gene

Orthologs for LINC00921 Gene

Evolution for LINC00921 Gene

ENSEMBL:
Gene Tree for LINC00921 (if available)
TreeFam:
Gene Tree for LINC00921 (if available)

No data available for Orthologs for LINC00921 Gene

Paralogs for LINC00921 Gene

No data available for Paralogs for LINC00921 Gene

Variants for LINC00921 Gene

Additional dbSNP identifiers (rs#s) for LINC00921 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00921 Gene

Variant ID Type Subtype PubMed ID
nsv1036149 CNV gain 25217958
nsv1044147 CNV loss 25217958
nsv509592 CNV insertion 20534489

Additional Variant Information for LINC00921 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00921

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00921 Gene

Disorders for LINC00921 Gene

Additional Disease Information for LINC00921

No disorders were found for LINC00921 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00921 Gene

Publications for LINC00921 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00921 Gene

Sources for LINC00921 Gene