Aliases for LINC00920 Gene

Subcategory (RNA class) for LINC00920 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00920 Gene

  • Long Intergenic Non-Protein Coding RNA 920 2 3 5
  • LINC00920 2 168
  • Cancer Metastasis-Associated Long Intergenic Non-Coding RNA 3
  • Cancer Metastasis‐Associated Long Intergenic Non‐Coding RNA 2
  • CTD-2258A20.4 3
  • HSALNG0112089 167
  • NONHSAG019677 92
  • CALIC 3

External Ids for LINC00920 Gene

Previous GeneCards Identifiers for LINC00920 Gene

  • GC16P066444

Summaries for LINC00920 Gene

GeneCards Summary for LINC00920 Gene

LINC00920 (Long Intergenic Non-Protein Coding RNA 920) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00920 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00920 Gene

Genomics for LINC00920 Gene

GeneHancer (GH) Regulatory Elements for LINC00920 Gene

Promoters and enhancers for LINC00920 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00920 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00920 Gene

Genomic Locations for LINC00920 Gene
chr16:66,408,029-66,413,545
(GRCh38/hg38)
Size:
5,517 bases
Orientation:
Plus strand
chr16:66,442,427-66,446,038
(GRCh37/hg19)
Size:
3,612 bases
Orientation:
Plus strand

Genomic View for LINC00920 Gene

Genes around LINC00920 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00920 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00920 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00920 Gene

Proteins for LINC00920 Gene

Post-translational modifications for LINC00920 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00920 Gene

Domains & Families for LINC00920 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00920 Gene

Function for LINC00920 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00920 Gene

Localization for LINC00920 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00920 Gene

Pathways & Interactions for LINC00920 Gene

PathCards logo

SuperPathways for LINC00920 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00920 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00920 Gene

Drugs & Compounds for LINC00920 Gene

No Compound Related Data Available

Transcripts for LINC00920 Gene

mRNA/cDNA for LINC00920 Gene

11 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
11 LncBook transcripts :
10 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00920 Gene

No ASD Table

Relevant External Links for LINC00920 Gene

GeneLoc Exon Structure for
LINC00920

Expression for LINC00920 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00920 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00920 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.3) and Minor Salivary Gland (x4.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00920

genes like me logo Genes that share expression patterns with LINC00920: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00920 Gene

Orthologs for LINC00920 Gene

Evolution for LINC00920 Gene

ENSEMBL:
Gene Tree for LINC00920 (if available)
TreeFam:
Gene Tree for LINC00920 (if available)

No data available for Orthologs for LINC00920 Gene

Paralogs for LINC00920 Gene

No data available for Paralogs for LINC00920 Gene

Variants for LINC00920 Gene

Additional dbSNP identifiers (rs#s) for LINC00920 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00920 Gene

Variant ID Type Subtype PubMed ID
nsv572902 CNV loss 21841781
nsv833264 CNV gain 17160897

Additional Variant Information for LINC00920 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00920

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00920 Gene

Disorders for LINC00920 Gene

Additional Disease Information for LINC00920

No disorders were found for LINC00920 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00920 Gene

Publications for LINC00920 Gene

  1. The novel lncRNA CALIC upregulates AXL to promote colon cancer metastasis. (PMID: 31353791) Kawasaki Y … Akiyama T (EMBO reports 2019) 2 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LINC00920 Gene

Products for LINC00920 Gene

Sources for LINC00920 Gene