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Aliases for LINC00920 Gene

Subcategory (RNA class) for LINC00920 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC00920 Gene

  • Long Intergenic Non-Protein Coding RNA 920 2 3 5
  • CTD-2258A20.4 3

External Ids for LINC00920 Gene

Summaries for LINC00920 Gene

GeneCards Summary for LINC00920 Gene

LINC00920 (Long Intergenic Non-Protein Coding RNA 920) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00920 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00920 Gene

Genomics for LINC00920 Gene

GeneHancer (GH) Regulatory Elements for LINC00920 Gene

Promoters and enhancers for LINC00920 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I066406 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 595.4 -0.5 -454 4.1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF48 SLC30A9 ARID2 ZNF143 LINC00920 CDH5 CMTM2 CMTM4 DYNC1LI2 LOC106699570 CA7 RRAD CMTM3 GC16M066396
GH16I066378 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 34.7 -27.1 -27100 6.4 ATF1 INSM2 YBX1 PLRG1 ZBTB40 RFX5 ZNF155 ZNF366 RCOR1 FOS LINC00920 NAE1 KIAA0895L E2F4 ENSG00000260465 HSF4 CDH5 GC16P066378
GH16I066357 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.3 -44.8 -44836 12.6 RAD21 ZNF121 ZNF23 ZNF143 ATF7 FOS MIXL1 EGR2 ZNF654 NR2F2 CDH5 PIR36503 KIAA0895L NAE1 LINC00920 HSF4 LRRC36 LOC105371318 RNA5SP428
GH16I066399 Enhancer 0.7 ENCODE dbSUPER 35.3 -8.5 -8514 1.6 PRDM6 ZFP36 FEZF1 EZH2 LINC00920 CDH5 BEAN1 CMTM3 DYNC1LI2 LOC106699570 GC16M066396 GC16P066378
GH16I066829 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.5 +421.9 421905 2.3 HDGF ARID4B SIN3A DMAP1 YY1 POLR2B ZNF213 E2F8 ZNF207 ZNF143 NAE1 ACD LINC00920 TERB1 HSF4 KIAA0895L B3GNT9 CA7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00920 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00920 Gene

Genomic Locations for LINC00920 Gene
3,612 bases
Plus strand

Genomic View for LINC00920 Gene

Genes around LINC00920 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00920 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00920 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00920 Gene

Proteins for LINC00920 Gene

Post-translational modifications for LINC00920 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00920 Gene

Domains & Families for LINC00920 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00920 Gene

Function for LINC00920 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00920 Gene

Localization for LINC00920 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00920 Gene

Pathways & Interactions for LINC00920 Gene

SuperPathways for LINC00920 Gene

No Data Available

Interacting Proteins for LINC00920 Gene

Gene Ontology (GO) - Biological Process for LINC00920 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC00920 Gene

Drugs & Compounds for LINC00920 Gene

No Compound Related Data Available

Transcripts for LINC00920 Gene

mRNA/cDNA for LINC00920 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00920 Gene

No ASD Table

Relevant External Links for LINC00920 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC00920 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00920 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00920 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.3) and Minor Salivary Gland (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of LINC00920 Gene:

genes like me logo Genes that share expression patterns with LINC00920: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00920 Gene

Orthologs for LINC00920 Gene

Evolution for LINC00920 Gene

Gene Tree for LINC00920 (if available)
Gene Tree for LINC00920 (if available)

No data available for Orthologs for LINC00920 Gene

Paralogs for LINC00920 Gene

No data available for Paralogs for LINC00920 Gene

Variants for LINC00920 Gene

Sequence variations from dbSNP and Humsavar for LINC00920 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000295321 -- 66,409,759(+) AGGAGG/AGG intron_variant
rs1000580919 -- 66,410,762(+) T/C non_coding_transcript_variant
rs1001034840 -- 66,411,037(+) T/C downstream_transcript_variant
rs1001571743 -- 66,408,918(+) A/G intron_variant
rs1001782649 -- 66,409,142(+) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00920 Gene

Variant ID Type Subtype PubMed ID
nsv572902 CNV loss 21841781
nsv833264 CNV gain 17160897

Additional Variant Information for LINC00920 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00920 Gene

Disorders for LINC00920 Gene

Additional Disease Information for LINC00920

No disorders were found for LINC00920 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00920 Gene

Publications for LINC00920 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC00920 Gene

Sources for LINC00920 Gene

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