Aliases for LINC00917 Gene

Subcategory (RNA class) for LINC00917 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00917 Gene

  • Long Intergenic Non-Protein Coding RNA 917 2 3 5
  • LINC00917 2 170
  • HSALNG0113287 169
  • NONHSAG020216 94

External Ids for LINC00917 Gene

Summaries for LINC00917 Gene

GeneCards Summary for LINC00917 Gene

LINC00917 (Long Intergenic Non-Protein Coding RNA 917) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00917 include Degenerative Disc Disease.

Additional gene information for LINC00917 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00917 Gene

Genomics for LINC00917 Gene

GeneHancer (GH) Regulatory Elements for LINC00917 Gene

Promoters and enhancers for LINC00917 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J086349 Enhancer 0.5 FANTOM5 750.6 +0.9 919 0.1 ZNF629 MNT ZNF580 ZNF623 ZMYM3 LINC00917 ENSG00000269826
GH16J086350 Enhancer 0.5 Ensembl 750.6 -0.4 -400 2.4 CREB1 ZNF629 ATF7 ZNF623 ATF2 LINC00917 ENSG00000269826 HSALNG0113290
GH16J086491 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.3 -154.2 -154236 28.1 ZNF785 CTCF POLR2A CTBP1 MYC CC2D1A MAX RAD21 MNT SP1 FOXF1 MTHFSD ENSG00000261697 LOC101928659 ENSG00000269826 ENSG00000261177 ENSG00000243705 ENSG00000269898 C16orf95 LINC00917
GH16J086299 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.7 +48.2 48231 5.2 PRDM1 ZSCAN4 ZNF316 MNT NFE2 MAFG POLR2A MAFK NR2F2 ZMYM3 lnc-FOXF1-1 LINC00917 LINC01081 LINC02135
GH16J086193 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.2 +152.5 152475 10.2 GATA3 ZNF217 HLF NCOA3 MYC PKNOX1 ZIC2 RNF2 CTBP1 NFE2 ENSG00000268505 LINC00917 FOXF1 LOC101928582 LINC01082
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00917 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00917 Gene

Genomic Locations for LINC00917 Gene
chr16:86,331,600-86,350,601
(GRCh38/hg38)
Size:
19,002 bases
Orientation:
Minus strand
chr16:86,365,450-86,383,289
(GRCh37/hg19)
Size:
17,840 bases
Orientation:
Minus strand

Genomic View for LINC00917 Gene

Genes around LINC00917 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00917 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00917 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00917 Gene

Proteins for LINC00917 Gene

Post-translational modifications for LINC00917 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00917 Gene

Domains & Families for LINC00917 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00917 Gene

Function for LINC00917 Gene

Phenotypes From GWAS Catalog for LINC00917 Gene

Phenotypes for LINC00917 Gene

genes like me logo Genes that share phenotypes with LINC00917: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00917 Gene

Localization for LINC00917 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00917 Gene

Pathways & Interactions for LINC00917 Gene

PathCards logo

SuperPathways for LINC00917 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00917 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00917 Gene

Drugs & Compounds for LINC00917 Gene

No Compound Related Data Available

Transcripts for LINC00917 Gene

mRNA/cDNA for LINC00917 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(17) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(17) RNACentral transcripts :
(15) LNCipedia transcripts :
(10) NONCODE transcripts :
(11) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00917 Gene

No ASD Table

Relevant External Links for LINC00917 Gene

GeneLoc Exon Structure for
LINC00917
ECgene alternative splicing isoforms for
LINC00917

Expression for LINC00917 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00917 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00917 Gene

This gene is overexpressed in Testis (x52.6).

NURSA nuclear receptor signaling pathways regulating expression of LINC00917 Gene:

LINC00917
genes like me logo Genes that share expression patterns with LINC00917: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00917 Gene

Orthologs for LINC00917 Gene

Evolution for LINC00917 Gene

ENSEMBL:
Gene Tree for LINC00917 (if available)
TreeFam:
Gene Tree for LINC00917 (if available)

No data available for Orthologs for LINC00917 Gene

Paralogs for LINC00917 Gene

No data available for Paralogs for LINC00917 Gene

Variants for LINC00917 Gene

Sequence variations from dbSNP and Humsavar for LINC00917 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000028567 -- 86,345,806(-) G/C upstream_transcript_variant
rs1000029870 -- 86,343,225(-) T/C intron_variant
rs1000184079 -- 86,342,368(-) C/A intron_variant
rs1000200140 -- 86,338,752(-) C/A non_coding_transcript_variant
rs1000250956 -- 86,338,885(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00917 Gene

Variant ID Type Subtype PubMed ID
esv2714874 CNV deletion 23290073
esv2714875 CNV deletion 23290073
esv2714876 CNV deletion 23290073
esv4262 OTHER complex 18987735
esv9547 OTHER inversion 19470904
nsv1065605 CNV gain 25217958
nsv483044 CNV gain 15286789
nsv833317 CNV gain 17160897

Additional Variant Information for LINC00917 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00917

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00917 Gene

Disorders for LINC00917 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00917 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
degenerative disc disease
  • lumbar disc degeneration
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00917

genes like me logo Genes that share disorders with LINC00917: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00917 Gene

Publications for LINC00917 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 56
  2. Genome-wide meta-analysis for severe diabetic retinopathy. (PMID: 21441570) Grassi MA … Nicolae DL (Human molecular genetics 2011) 3 56
  3. Genome-wide association of lipid-lowering response to statins in combined study populations. (PMID: 20339536) Barber MJ … Krauss RM (PloS one 2010) 3 56
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC00917 Gene

Sources for LINC00917 Gene