Aliases for LINC00908 Gene

Data sources for LINC00908 Gene:

Subcategory (RNA class) for LINC00908 Gene

lncRNA

Aliases for LINC00908 Gene

External Ids for LINC00908 Gene

Previous GeneCards Identifiers for LINC00908 Gene

  • GC18P074242

Summaries for LINC00908 Gene

GeneCards Summary for LINC00908 Gene

LINC00908 (Long Intergenic Non-Protein Coding RNA 908) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00908 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00908 Gene

Genomics for LINC00908 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00908 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J076527 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.2 150 2.2 CEBPA FOXA2 SMAD4 ZNF341 RXRA ETV4 EBF1 GABPB1 RARA DMAP1 LINC00683 LINC00908 ZNF516 HSALNG0122570 ZNF236
GH18J076526 Enhancer 0.3 dbSUPER 250.7 -1.4 -1407 0.6 ZNF146 LINC00683 LINC00908 HSALNG0122570 ZNF516 HSALNG0122569 ZNF236
GH18J076530 Enhancer 0.2 dbSUPER 250.7 +1.8 1779 0.4 LINC00683 LINC00908 HSALNG0122570 ZNF516 ZNF236
GH18J077094 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5 +577.6 577598 22.8 SP1 MXD4 BCL11A FEZF1 CEBPA ETS1 ZIC2 HOMEZ THAP11 CEBPB ENSG00000278330 MBP LINC00908 ENSG00000279433 HSALNG0122608 LOC107987261 ENSG00000275178 lnc-MBP-13 ZNF236
GH18J076524 Promoter/Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.7 -3.1 -3135 1.3 FOXA2 FOXA1 ZBTB48 CBX2 RFX1 SP7 KDM1A ARID3A PRDM10 CBX8 LINC00683 LINC00908 HSALNG0122570 HSALNG0122569 ZNF516 ZNF236
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00908 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00908 Gene

Latest Assembly
chr18:76,528,652-76,670,111
(GRCh38/hg38)
Size:
141,460 bases
Orientation:
Plus strand

Previous Assembly
chr18:74,240,612-74,271,784
(GRCh37/hg19 by Entrez Gene)
Size:
31,173 bases
Orientation:
Plus strand

Genomic View for LINC00908 Gene

Genes around LINC00908 on UCSC Golden Path with GeneCards custom track
LINC00908 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00908 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00908 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00908 Gene

Proteins for LINC00908 Gene

Post-translational modifications for LINC00908 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00908 Gene

Domains & Families for LINC00908 Gene

Gene Families for LINC00908 Gene

genes like me logo Genes that share domains with LINC00908: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00908 Gene

Function for LINC00908 Gene

Phenotypes From GWAS Catalog for LINC00908 Gene

genes like me logo Genes that share phenotypes with LINC00908: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00908 Gene

Localization for LINC00908 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00908 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00908 Gene

Pathways & Interactions for LINC00908 Gene

PathCards logo

SuperPathways for LINC00908 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00908 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00908 Gene

Drugs & Compounds for LINC00908 Gene

No Compound Related Data Available

Transcripts for LINC00908 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00908 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003481EE_9606 lncRNA 2223 5

RefSeq: NR_120419,

Ensembl: ENST00000578803 (view in UCSC) ,

LncBook: HSALNT0253394,

LNCipedia: LINC00683:4,

NONCODE: NONHSAT059940.2,

URS00003F44A4_9606 lncRNA 3510 4

Ensembl: ENST00000579781 (view in UCSC) ,

LncBook: HSALNT0253380,

LNCipedia: LINC00683:2,

NONCODE: NONHSAT059938.2,

URS00007DFBD5_9606 lncRNA 479 4

Ensembl: ENST00000582452 (view in UCSC) ,

LncBook: HSALNT0253365,

LNCipedia: LINC00908:10,

NONCODE: NONHSAT178051.1,

URS00007DB333_9606 lncRNA 372 4

Ensembl: ENST00000584910 (view in UCSC) ,

LncBook: HSALNT0253363,

LNCipedia: LINC00908:9,

NONCODE: NONHSAT178050.1,

URS00007C005A_9606 lncRNA 789 3

Ensembl: ENST00000584120 (view in UCSC) ,

LNCipedia: LINC00908:12,

NONCODE: NONHSAT059935.2,

LINC00908 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00908 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00908 Gene

No ASD Table

Relevant External Links for LINC00908 Gene

GeneLoc Exon Structure for
LINC00908

Expression for LINC00908 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00908 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00908 Gene

This gene is overexpressed in Ovary (x6.0) and Cervix - Endocervix (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00908

genes like me logo Genes that share expression patterns with LINC00908: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00908 Gene

Orthologs for LINC00908 Gene

Evolution for LINC00908 Gene

ENSEMBL:
Gene Tree for LINC00908 (if available)
TreeFam:
Gene Tree for LINC00908 (if available)

No data available for Orthologs for LINC00908 Gene

Paralogs for LINC00908 Gene

No data available for Paralogs for LINC00908 Gene

Variants for LINC00908 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00908 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00908 Gene

Variant ID Type Subtype PubMed ID
esv2717388 CNV deletion 23290073
esv3643171 CNV loss 21293372
nsv1061850 CNV loss 25217958
nsv1063632 CNV gain 25217958
nsv1064685 CNV gain 25217958
nsv833697 CNV loss 17160897

Variation tolerance for LINC00908 Gene

Gene Damage Index Score: 0.06; 1.38% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC00908 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00908

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC00908 Gene

Disorders for LINC00908 Gene

Additional Disease Information for LINC00908

No disorders were found for LINC00908 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00908 Gene

Publications for LINC00908 Gene

  1. LINC00908 negatively regulates microRNA-483-5p to increase TSPYL5 expression and inhibit the development of prostate cancer. (PMID: 31938018) Fan L … Zhang Y (Cancer cell international 2020) 2 3
  2. LncRNA-encoded polypeptide ASRPS inhibits triple-negative breast cancer angiogenesis. (PMID: 31816634) Wang Y … Zhou Y (The Journal of experimental medicine 2020) 2 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00908 Gene

Sources for LINC00908 Gene