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Aliases for LINC00907 Gene

Subcategory (RNA class) for LINC00907 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00907 Gene

  • Long Intergenic Non-Protein Coding RNA 907 2 3 5

External Ids for LINC00907 Gene

Previous GeneCards Identifiers for LINC00907 Gene

  • GC18P039739

Summaries for LINC00907 Gene

GeneCards Summary for LINC00907 Gene

LINC00907 (Long Intergenic Non-Protein Coding RNA 907) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00907 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00907 Gene

Genomics for LINC00907 Gene

GeneHancer (GH) Regulatory Elements for LINC00907 Gene

Promoters and enhancers for LINC00907 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J042157 Enhancer 0.3 Ensembl 600.7 -1.2 -1182 1 HNF4A LINC00907 GC18P042131
GH18J042192 Enhancer 1.1 FANTOM5 Ensembl ENCODE 5.6 +33.8 33762 0.9 ELF3 CEBPG IKZF1 CEBPA TCF7L2 PKNOX1 FOXA2 SOX13 CEBPB ZBTB26 LINC00907 RNA5SP454
GH18J042182 Enhancer 0.8 Ensembl ENCODE 0.3 +24.4 24386 1.5 MAFK IKZF1 BACH1 ZNF316 NFE2 ZBTB26 JUND FOS FOSL2 MAFF LINC00907 RNA5SP454
GH18J042275 Enhancer 0.8 Ensembl ENCODE 0.1 +116.4 116373 2.1 CTCF RAD21 PRDM10 ZSCAN4 ZNF692 ZNF239 ZSCAN5C ZNF335 ZNF843 GC18M042277 RNA5SP454 LINC00907
GH18J042241 Enhancer 0.5 FANTOM5 0.2 +82.3 82307 0.4 HNF4A RARA HNF4G RNA5SP454 LINC00907
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00907 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00907 Gene

Genomic Locations for LINC00907 Gene
chr18:42,159,283-42,691,426
(GRCh38/hg38)
Size:
532,144 bases
Orientation:
Plus strand
chr18:39,739,247-40,271,387
(GRCh37/hg19)
Size:
532,141 bases
Orientation:
Plus strand

Genomic View for LINC00907 Gene

Genes around LINC00907 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00907 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00907 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00907 Gene

Proteins for LINC00907 Gene

Post-translational modifications for LINC00907 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00907 Gene

Domains & Families for LINC00907 Gene

Suggested Antigen Peptide Sequences for LINC00907 Gene

GenScript: Design optimal peptide antigens:
  • LOC284260 protein (Q8WTX6_HUMAN)

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for LINC00907 Gene

Function for LINC00907 Gene

Phenotypes From GWAS Catalog for LINC00907 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00907 Gene

Localization for LINC00907 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00907 Gene

Pathways & Interactions for LINC00907 Gene

PathCards logo

SuperPathways for LINC00907 Gene

No Data Available

Interacting Proteins for LINC00907 Gene

Gene Ontology (GO) - Biological Process for LINC00907 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00907 Gene

Drugs & Compounds for LINC00907 Gene

No Compound Related Data Available

Transcripts for LINC00907 Gene

mRNA/cDNA for LINC00907 Gene

(8) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(11) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(15) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00907 Gene

No ASD Table

Relevant External Links for LINC00907 Gene

GeneLoc Exon Structure for
LINC00907
ECgene alternative splicing isoforms for
LINC00907

Expression for LINC00907 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00907 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00907 Gene

This gene is overexpressed in Liver (x19.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC00907 Gene:

LINC00907
genes like me logo Genes that share expression patterns with LINC00907: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00907 Gene

Orthologs for LINC00907 Gene

Evolution for LINC00907 Gene

ENSEMBL:
Gene Tree for LINC00907 (if available)
TreeFam:
Gene Tree for LINC00907 (if available)

No data available for Orthologs for LINC00907 Gene

Paralogs for LINC00907 Gene

No data available for Paralogs for LINC00907 Gene

Variants for LINC00907 Gene

Sequence variations from dbSNP and Humsavar for LINC00907 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000001502 -- 42,223,798(+) A/G intron_variant
rs1000001593 -- 42,609,178(+) ACACACA/ACA genic_downstream_transcript_variant, intron_variant
rs1000005584 -- 42,674,926(+) C/A genic_downstream_transcript_variant, intron_variant
rs1000006149 -- 42,509,228(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000007865 -- 42,347,969(+) C/A/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00907 Gene

Variant ID Type Subtype PubMed ID
dgv1586n106 CNV deletion 24896259
dgv17e198 CNV loss 23635498
dgv3344n100 CNV loss 25217958
dgv5900n54 CNV loss 21841781
dgv5901n54 CNV loss 21841781
dgv5902n54 CNV loss 21841781
dgv5903n54 CNV loss 21841781
dgv5904n54 CNV loss 21841781
dgv591e199 CNV deletion 23128226
esv2421511 CNV deletion 20811451
esv2421962 CNV deletion 20811451
esv2660678 CNV deletion 23128226
esv2717013 CNV deletion 23290073
esv2758725 CNV loss 17122850
esv2760483 CNV loss 21179565
esv2760486 CNV loss 21179565
esv2762899 CNV gain+loss 21179565
esv27751 CNV loss 19812545
esv3308344 CNV mobile element insertion 20981092
esv3397046 CNV insertion 20981092
esv34153 CNV loss 18971310
esv3555281 CNV deletion 23714750
esv3642350 CNV loss 21293372
esv3642353 CNV loss 21293372
esv3642357 CNV loss 21293372
esv3642359 CNV loss 21293372
esv3642360 CNV loss 21293372
esv3642361 CNV loss 21293372
esv3893097 CNV gain 25118596
esv3893098 CNV gain 25118596
nsv1055614 CNV gain 25217958
nsv1056694 CNV gain 25217958
nsv1058002 CNV gain 25217958
nsv1059409 CNV loss 25217958
nsv1059553 CNV loss 25217958
nsv1063343 CNV gain 25217958
nsv130787 CNV insertion 16902084
nsv442751 CNV loss 18776908
nsv471800 CNV loss 16327809
nsv475044 CNV novel sequence insertion 20440878
nsv511062 OTHER complex 20534489
nsv514867 CNV gain+loss 21397061
nsv525562 CNV gain 19592680
nsv525717 CNV loss 19592680
nsv576736 CNV loss 21841781
nsv576737 CNV loss 21841781
nsv576758 CNV loss 21841781
nsv817790 CNV gain 17921354
nsv828218 CNV loss 20364138
nsv833631 CNV loss 17160897
nsv833632 CNV loss 17160897
nsv954931 CNV deletion 24416366
nsv962972 CNV deletion 23825009

Additional Variant Information for LINC00907 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00907

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00907 Gene

Disorders for LINC00907 Gene

Additional Disease Information for LINC00907

No disorders were found for LINC00907 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00907 Gene

Publications for LINC00907 Gene

  1. Genetics of coronary artery calcification among African Americans, a meta-analysis. (PMID: 23870195) Wojczynski MK … Reilly MP (BMC medical genetics 2013) 3 58
  2. Genome-wide association study of chronic periodontitis in a general German population. (PMID: 24024966) Teumer A … Kocher T (Journal of clinical periodontology 2013) 3 58
  3. The genetic architecture of economic and political preferences. (PMID: 22566634) Benjamin DJ … Visscher PM (Proceedings of the National Academy of Sciences of the United States of America 2012) 3 58
  4. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58
  5. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3 58

Products for LINC00907 Gene

Sources for LINC00907 Gene

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