Aliases for LINC00906 Gene

Subcategory (RNA class) for LINC00906 Gene


Number of RNA Genes sources:

3 / 17

Aliases for LINC00906 Gene

  • Long Intergenic Non-Protein Coding RNA 906 2 3 5
  • LINC00906 2 5 165
  • NONHSAG025398.2 91
  • CTD-2081K17.1 3
  • HSALNG0125173 164
  • Lnc-VSTM2B-7 165

External Ids for LINC00906 Gene

Previous GeneCards Identifiers for LINC00906 Gene

  • GC19P029458
  • GC19P028965

Summaries for LINC00906 Gene

GeneCards Summary for LINC00906 Gene

LINC00906 (Long Intergenic Non-Protein Coding RNA 906) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00906 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00906 Gene

Genomics for LINC00906 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00906 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J028882 Promoter/Enhancer 0.7 Ensembl ENCODE 600.7 +0.5 508 1.7 ZIC2 USF1 ZNF146 LINC00906 ENSG00000267617 ENSG00000267027 LOC107985336 UQCRFS1
GH19J028878 Enhancer 0.6 Ensembl 0.7 -4.1 -4129 0.6 CTCF REST RAD21 ZNF561 SMC3 ZNF335 ZNF654 ZNF513 ZNF660 GLIS1 ENSG00000267617 LINC00906 UQCRFS1
GH19J028880 Enhancer 0.4 ENCODE 0.7 -2.0 -2004 1.4 PKNOX1 EBF1 NANOG POU5F1 ENSG00000267617 LINC00906 UQCRFS1
GH19J028920 Enhancer 0.5 Ensembl ENCODE 0.3 +37.6 37571 1.2 ZIC2 ZNF547 SNODB1736 ENSG00000267683 LINC00906 UQCRFS1
GH19J028898 Enhancer 0.3 Ensembl ENCODE 0.4 +15.0 14971 0.4 ENSG00000267683 LINC00906 SNODB1736 UQCRFS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00906 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00906 Gene

Genomic Locations for LINC00906 Gene
87,445 bases
Plus strand
5,744 bases
Plus strand

Genomic View for LINC00906 Gene

Genes around LINC00906 on UCSC Golden Path with GeneCards custom track
LINC00906 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00906 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00906 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00906 Gene

Proteins for LINC00906 Gene

Post-translational modifications for LINC00906 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00906 Gene

Domains & Families for LINC00906 Gene

Gene Families for LINC00906 Gene

genes like me logo Genes that share domains with LINC00906: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00906 Gene

Function for LINC00906 Gene

Phenotypes From GWAS Catalog for LINC00906 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00906 Gene

Localization for LINC00906 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00906 Gene

Pathways & Interactions for LINC00906 Gene

PathCards logo

SuperPathways for LINC00906 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00906 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00906 Gene

Drugs & Compounds for LINC00906 Gene

No Compound Related Data Available

Transcripts for LINC00906 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00906 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000045DF44_9606 lncRNA 3444 6

HGNC: 27121,

RefSeq: NR_027318,

Ensembl: ENST00000589921 (view in UCSC) ,

LncBook: HSALNT0258004,

LNCipedia: LINC00906:2,


URS00005ECE8E_9606 lncRNA 392 4

Ensembl: ENST00000589623 (view in UCSC) ,

LncBook: HSALNT0258031,

LNCipedia: LINC00906:15,


URS000057EEA0_9606 lncRNA 314 4

Ensembl: ENST00000588609 (view in UCSC) ,

LncBook: HSALNT0258029,

LNCipedia: LINC00906:14,


URS00003AA3CF_9606 lncRNA 537 3

Ensembl: ENST00000591285 (view in UCSC) ,

LNCipedia: lnc-VSTM2B-7:3,


URS0000EF5AF9_9606 lncRNA 3926 1

Ensembl: ENST00000657984 (view in UCSC) ,

LINC00906 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00906 Gene

7 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00906 Gene

No ASD Table

Relevant External Links for LINC00906 Gene

GeneLoc Exon Structure for

Expression for LINC00906 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00906 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00906 Gene

This gene is overexpressed in Testis (x32.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00906

genes like me logo Genes that share expression patterns with LINC00906: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00906 Gene

Orthologs for LINC00906 Gene

Evolution for LINC00906 Gene

Gene Tree for LINC00906 (if available)
Gene Tree for LINC00906 (if available)

No data available for Orthologs for LINC00906 Gene

Paralogs for LINC00906 Gene

No data available for Paralogs for LINC00906 Gene

Variants for LINC00906 Gene

Additional dbSNP identifiers (rs#s) for LINC00906 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00906 Gene

Variant ID Type Subtype PubMed ID
esv2758753 CNV loss 17122850
esv27610 CNV loss 19812545
esv3644110 CNV loss 21293372
nsv1059473 CNV gain 25217958
nsv1061604 CNV loss 25217958

Additional Variant Information for LINC00906 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00906 Gene

Disorders for LINC00906 Gene

No disorders were found for LINC00906 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00906 Gene

Publications for LINC00906 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00906 Gene

Sources for LINC00906 Gene