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Aliases for LINC00905 Gene

Subcategory (RNA class) for LINC00905 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00905 Gene

  • Long Intergenic Non-Protein Coding RNA 905 2 3 5

External Ids for LINC00905 Gene

Previous GeneCards Identifiers for LINC00905 Gene

  • GC19P017384
  • GC19P017936

Summaries for LINC00905 Gene

GeneCards Summary for LINC00905 Gene

LINC00905 (Long Intergenic Non-Protein Coding RNA 905) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00905 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00905 Gene

Genomics for LINC00905 Gene

GeneHancer (GH) Regulatory Elements for LINC00905 Gene

Promoters and enhancers for LINC00905 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J016029 Enhancer 0.5 Ensembl 600.7 -1.1 -1106 2.4 CBFA2T2 ZIC2 RAD51 DACH1 GC19M016032 PIR36510 PIR43951 LINC00905 SNX33P1 ENSG00000267056 PIR51387 PIRC97
GH19J016040 Enhancer 0.6 ENCODE 6.4 +9.5 9459 0.6 ELF3 PPARG RXRA SP1 GABPA ZBTB17 GABPB1 ZNF395 TFAP4 ARID4B GC19P020996 GC19P021033 GC19P021034 GC19P021131 GC19P021135 GC19P021137 GC19P021346 GC19P021349 GC19P021352 GC19P021357
GH19J016041 Enhancer 0.8 ENCODE 0.4 +10.3 10279 0.4 ELF3 CC2D1A CTCF PPARG RAD21 IKZF1 KAT8 RXRA ZBTB33 CEBPA GC19P020698 GC19P020702 GC19P020749 GC19P020841 GC19P020996 GC19P021007 GC19P021017 GC19P021019 GC19P021038 GC19P021058
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00905 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00905 Gene

Genomic Locations for LINC00905 Gene
chr19:16,031,307-16,042,135
(GRCh38/hg38)
Size:
10,829 bases
Orientation:
Plus strand
chr19:16,142,117-16,152,926
(GRCh37/hg19)
Size:
10,810 bases
Orientation:
Plus strand

Genomic View for LINC00905 Gene

Genes around LINC00905 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00905 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00905 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00905 Gene

Proteins for LINC00905 Gene

Post-translational modifications for LINC00905 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00905 Gene

Domains & Families for LINC00905 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00905 Gene

Function for LINC00905 Gene

genes like me logo Genes that share phenotypes with LINC00905: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00905 Gene

Localization for LINC00905 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00905 Gene

Pathways & Interactions for LINC00905 Gene

PathCards logo

SuperPathways for LINC00905 Gene

No Data Available

Interacting Proteins for LINC00905 Gene

Gene Ontology (GO) - Biological Process for LINC00905 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00905 Gene

Drugs & Compounds for LINC00905 Gene

No Compound Related Data Available

Transcripts for LINC00905 Gene

mRNA/cDNA for LINC00905 Gene

(8) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00905 Gene

No ASD Table

Relevant External Links for LINC00905 Gene

GeneLoc Exon Structure for
LINC00905
ECgene alternative splicing isoforms for
LINC00905

Expression for LINC00905 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00905 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00905 Gene

This gene is overexpressed in Testis (x52.8).

NURSA nuclear receptor signaling pathways regulating expression of LINC00905 Gene:

LINC00905
genes like me logo Genes that share expression patterns with LINC00905: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00905 Gene

Orthologs for LINC00905 Gene

Evolution for LINC00905 Gene

ENSEMBL:
Gene Tree for LINC00905 (if available)
TreeFam:
Gene Tree for LINC00905 (if available)

No data available for Orthologs for LINC00905 Gene

Paralogs for LINC00905 Gene

No data available for Paralogs for LINC00905 Gene

Variants for LINC00905 Gene

Sequence variations from dbSNP and Humsavar for LINC00905 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000458242 -- 16,037,926(+) C/A intron_variant
rs1000815610 -- 16,038,316(+) G/A intron_variant
rs1000846596 -- 16,038,469(+) G/A intron_variant
rs1001256945 -- 16,032,973(+) C/A/T upstream_transcript_variant
rs1001407392 -- 16,034,111(+) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00905 Gene

Variant ID Type Subtype PubMed ID
dgv200n21 CNV loss 19592680
esv2718254 CNV deletion 23290073
nsv1064684 CNV gain 25217958
nsv458372 CNV loss 19166990
nsv578734 CNV loss 21841781
nsv578735 CNV loss 21841781

Additional Variant Information for LINC00905 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00905

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00905 Gene

Disorders for LINC00905 Gene

Additional Disease Information for LINC00905

No disorders were found for LINC00905 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00905 Gene

Publications for LINC00905 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00905 Gene

Sources for LINC00905 Gene

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