Aliases for LINC00904 Gene

Subcategory (RNA class) for LINC00904 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00904 Gene

  • Long Intergenic Non-Protein Coding RNA 904 2 3
  • LINC00904 2 165
  • NONHSAG025540.2 91
  • CTC-523E23.13 3
  • HSALNG0125536 164

External Ids for LINC00904 Gene

Previous GeneCards Identifiers for LINC00904 Gene

  • GC19M036559
  • GC19M037092
  • GC19M034892
  • GC19M039183
  • GC19M041400

Summaries for LINC00904 Gene

GeneCards Summary for LINC00904 Gene

LINC00904 (Long Intergenic Non-Protein Coding RNA 904) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00904 include Chromosome 19Q13.11 Deletion Syndrome.

Additional gene information for LINC00904 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00904 Gene

Genomics for LINC00904 Gene

Genomic Locations for LINC00904 Gene

Genomic Locations for LINC00904 Gene
chr19:34,890,269-34,898,943
(GRCh38/hg38)
Size:
8,675 bases
Orientation:
Minus strand
chr19:35,382,933-35,389,847
(GRCh37/hg19)
Size:
6,915 bases
Orientation:
Minus strand

Genomic View for LINC00904 Gene

Genes around LINC00904 on UCSC Golden Path with GeneCards custom track
LINC00904 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00904 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00904 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00904 Gene

No data available for GeneHancer (GH) Regulatory Elements for LINC00904 Gene

Proteins for LINC00904 Gene

Post-translational modifications for LINC00904 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00904 Gene

Domains & Families for LINC00904 Gene

Gene Families for LINC00904 Gene

genes like me logo Genes that share domains with LINC00904: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00904 Gene

Function for LINC00904 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00904 Gene

Localization for LINC00904 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00904 Gene

Pathways & Interactions for LINC00904 Gene

PathCards logo

SuperPathways for LINC00904 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00904 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00904 Gene

Drugs & Compounds for LINC00904 Gene

No Compound Related Data Available

Transcripts for LINC00904 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00904 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000044FE79_9606 lncRNA 471 5

HGNC: 44325,

RefSeq: NR_046222,

LncBook: HSALNT0258751,

LNCipedia: LINC00904:1,

NONCODE: NONHSAT065636.2,

URS00008B614C_9606 lncRNA 2227 2

LNCipedia: LINC00904:2,

NONCODE: NONHSAT065499.2,

LINC00904 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00904 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00904 Gene

No ASD Table

Relevant External Links for LINC00904 Gene

GeneLoc Exon Structure for
LINC00904

Expression for LINC00904 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00904 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00904 Gene

This gene is overexpressed in Testis (x47.4).
genes like me logo Genes that share expression patterns with LINC00904: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00904 Gene

Orthologs for LINC00904 Gene

No data available for Orthologs and Evolution for LINC00904 Gene

Paralogs for LINC00904 Gene

No data available for Paralogs for LINC00904 Gene

Variants for LINC00904 Gene

Additional dbSNP identifiers (rs#s) for LINC00904 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00904 Gene

Variant ID Type Subtype PubMed ID
nsv1064600 CNV gain 25217958

Additional Variant Information for LINC00904 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00904

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00904 Gene

Disorders for LINC00904 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00904 Gene - From: DISEASES

Disorder Aliases PubMed IDs
chromosome 19q13.11 deletion syndrome
  • 19q13.11 microdeletion syndrome
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00904

genes like me logo Genes that share disorders with LINC00904: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00904 Gene

Publications for LINC00904 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3

Products for LINC00904 Gene

Sources for LINC00904 Gene