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Aliases for LINC00900 Gene
Data sources for LINC00900 Gene:
Subcategory (RNA class) for LINC00900 Gene
lncRNA
Aliases for LINC00900 Gene
- Long Intergenic Non-Protein Coding RNA 900 (HGNC, NCBI Entrez Gene, Ensembl)
- LINC00900 (Ensembl, LNCipedia)
- NONHSAG009688.2 (NONCODE)
- HSALNG0087365 (LncBook)
- CTC-774J1.2 (NCBI Entrez Gene)
External Ids for LINC00900 Gene
- HGNC: 27444
- NCBI Entrez Gene: 283143
- Ensembl: ENSG00000246100
Previous GeneCards Identifiers for LINC00900 Gene
- GC11M115624
Summaries for LINC00900 Gene
GeneCards Summary for LINC00900 Gene
LINC00900 (Long Intergenic Non-Protein Coding RNA 900) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC00900 Gene
- HGNC (27444)
- NCBI Entrez Gene (283143)
- Ensembl (ENSG00000246100)
- Open Targets Platform(ENSG00000246100)
- Search for LINC00900 at DataMed
- Search for LINC00900 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00900 Gene
Genomics for LINC00900 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00900 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J115759 | Promoter/Enhancer | 1.4 | EPDnew Ensembl ENCODE CraniofacialAtlas | 250.7 | +0.8 | 816 | 1.8 | EZH2 | LINC00900 HSALNG0087364 LINC02698 CADM1 | |
| GH11J115761 | Enhancer | 0.3 | FANTOM5 | 250.7 | -0.8 | -755 | 0.1 | SPI1 | LINC00900 AB372777-005 LINC02698 CADM1 | |
| GH11J115706 | Enhancer | 0.9 | FANTOM5 Ensembl ENCODE | 5.7 | +51.9 | 51899 | 8.2 | VEZF1 SPI1 BHLHE40 POLR2A MAX ZNF512 | LINC00900 HSALNG0087361 HSALNG0087359 ENSG00000279771 LINC02698 CADM1 | |
| GH11J115696 | Enhancer | 0.8 | FANTOM5 Ensembl CraniofacialAtlas | 5.6 | +64.2 | 64158 | 2.7 | ZIC2 ZNF341 GLIS1 ZNF398 SP7 | LINC00900 CADM1 HSALNG0087361 LINC02698 ENSG00000279771 | |
| GH11J115699 | Enhancer | 0.5 | Ensembl ENCODE | 5.7 | +60.1 | 60127 | 2.7 | ZIC2 FOXA2 | LINC00900 HSALNG0087361 HSALNG0087359 ENSG00000279771 LINC02698 CADM1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00900 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00900 Gene
Latest Assembly
- chr11:115,752,704-115,760,799
- (GRCh38/hg38)
- Size:
- 8,096 bases
- Orientation:
- Minus strand
Previous Assembly
- chr11:115,626,049-115,630,918
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 4,870 bases
- Orientation:
- Minus strand
- chr11:115,624,966-115,631,345
- (GRCh37/hg19 by Ensembl)
- Size:
- 6,380 bases
- Orientation:
- Minus strand
Genomic View for LINC00900 Gene
Genes around LINC00900 on UCSC Golden Path with GeneCards custom track
LINC00900 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q23.3 by HGNC
- 11q23.3 by Entrez Gene
- 11q23.3 by Ensembl
LINC00900 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00900 Gene
Proteins for LINC00900 Gene
Post-translational modifications for LINC00900 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC00900 Gene
Domains & Families for LINC00900 Gene
Gene Families for LINC00900 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00900 Gene
Function for LINC00900 Gene
Phenotypes From GWAS Catalog for LINC00900 Gene
Phenotypes for LINC00900 Gene
- GenomeRNAi human phenotypes for LINC00900:
CRISPR products for research
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for LINC00900
- Browse OriGene Inhibitory RNA Products For LINC00900
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00900 Gene
Localization for LINC00900 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00900 Gene
Transcripts for LINC00900 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00900 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00004CAB08_9606 | lncRNA | 3325 | 4 |
Ensembl: ENST00000499809 (view in UCSC) , LncBook: HSALNT0181523, LNCipedia: LINC00900:9, NONCODE: NONHSAT024319.2, |
| URS000005EF63_9606 | lncRNA | 982 | 4 |
Ensembl: ENST00000501294 (view in UCSC) , LncBook: HSALNT0181529, LNCipedia: LINC00900:1, NONCODE: NONHSAT024320.2, |
| URS00004E8132_9606 | lncRNA | 578 | 4 |
Ensembl: ENST00000602803 (view in UCSC) , LncBook: HSALNT0181538, LNCipedia: LINC00900:12, NONCODE: NONHSAT024322.2, |
| URS00004BA096_9606 | lncRNA | 995 | 3 |
Ensembl: ENST00000514294 (view in UCSC) , LncBook: HSALNT0181532, HSALNT0181533, LNCipedia: LINC00900:21, LINC00900:7, |
| URS00000A7F2B_9606 | lncRNA | 693 | 3 |
Ensembl: ENST00000537070 (view in UCSC) , LncBook: HSALNT0181534, LNCipedia: LINC00900:10, |
LINC00900 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00900 Gene
- 5 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for LINC00900
- Browse OriGene Inhibitory RNA Products For LINC00900
Clone products for research
Relevant External Links for LINC00900 Gene
- GeneLoc Exon Structure for
- LINC00900
Expression for LINC00900 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00900
Primer products for research
-
OriGene qPCR primer pairs for LINC00900
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00900 Gene
Orthologs for LINC00900 Gene
No data available for Orthologs for LINC00900 Gene
Paralogs for LINC00900 Gene
No data available for Paralogs for LINC00900 Gene
Variants for LINC00900 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2750981 | CNV | gain | 17911159 |
Additional Variant Information for LINC00900 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00900
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00900 Gene
Disorders for LINC00900 Gene
Additional Disease Information for LINC00900
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC00900 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00900 Gene
Publications for LINC00900 Gene
- Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
Products for LINC00900 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00900
- Origene Custom Protein Services for LINC00900
- Origene shrna and RNAi products in human, mouse, rat for LINC00900
- Browse OriGene Inhibitory RNA Products For LINC00900
- OriGene qPCR primer pairs for LINC00900
- Browse CRISPR knockouts for LINC00900
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00900
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- antibodies-online: Search results for available LOC283143 related products ranked by validation data
- antibodies-online: Search results for available LOC283143 related products ranked by validation data
- antibodies-online: Search results for available LOC283143 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC00900
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC00900
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00900
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC00900
Sources for LINC00900 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB