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LINC00900 (Long Intergenic Non-Protein Coding RNA 900) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH11J115759 | Promoter/Enhancer | 1.4 | EPDnew Ensembl ENCODE CraniofacialAtlas | 250.7 | +0.8 | 816 | 1.8 | EZH2 | LINC00900 HSALNG0087364 LINC02698 CADM1 | |
GH11J115761 | Enhancer | 0.3 | FANTOM5 | 250.7 | -0.8 | -755 | 0.1 | SPI1 | LINC00900 AB372777-005 LINC02698 CADM1 | |
GH11J115706 | Enhancer | 0.9 | FANTOM5 Ensembl ENCODE | 5.7 | +51.9 | 51899 | 8.2 | VEZF1 SPI1 BHLHE40 POLR2A MAX ZNF512 | LINC00900 HSALNG0087361 HSALNG0087359 ENSG00000279771 LINC02698 CADM1 | |
GH11J115696 | Enhancer | 0.8 | FANTOM5 Ensembl CraniofacialAtlas | 5.6 | +64.2 | 64158 | 2.7 | ZIC2 ZNF341 GLIS1 ZNF398 SP7 | LINC00900 CADM1 HSALNG0087361 LINC02698 ENSG00000279771 | |
GH11J115699 | Enhancer | 0.5 | Ensembl ENCODE | 5.7 | +60.1 | 60127 | 2.7 | ZIC2 FOXA2 | LINC00900 HSALNG0087361 HSALNG0087359 ENSG00000279771 LINC02698 CADM1 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS00004CAB08_9606 | lncRNA | 3325 | 4 |
Ensembl: ENST00000499809 (view in UCSC) , LncBook: HSALNT0181523, LNCipedia: LINC00900:9, NONCODE: NONHSAT024319.2, |
URS000005EF63_9606 | lncRNA | 982 | 4 |
Ensembl: ENST00000501294 (view in UCSC) , LncBook: HSALNT0181529, LNCipedia: LINC00900:1, NONCODE: NONHSAT024320.2, |
URS00004E8132_9606 | lncRNA | 578 | 4 |
Ensembl: ENST00000602803 (view in UCSC) , LncBook: HSALNT0181538, LNCipedia: LINC00900:12, NONCODE: NONHSAT024322.2, |
URS00004BA096_9606 | lncRNA | 995 | 3 |
Ensembl: ENST00000514294 (view in UCSC) , LncBook: HSALNT0181532, HSALNT0181533, LNCipedia: LINC00900:21, LINC00900:7, |
URS00000A7F2B_9606 | lncRNA | 693 | 3 |
Ensembl: ENST00000537070 (view in UCSC) , LncBook: HSALNT0181534, LNCipedia: LINC00900:10, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv2750981 | CNV | gain | 17911159 |
No disorders were found for LINC00900 Gene.