Aliases for LINC00900 Gene

Data sources for LINC00900 Gene:

Subcategory (RNA class) for LINC00900 Gene

lncRNA

Aliases for LINC00900 Gene

External Ids for LINC00900 Gene

Previous GeneCards Identifiers for LINC00900 Gene

  • GC11M115624

Summaries for LINC00900 Gene

GeneCards Summary for LINC00900 Gene

LINC00900 (Long Intergenic Non-Protein Coding RNA 900) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00900 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00900 Gene

Genomics for LINC00900 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00900 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J115759 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 +0.8 816 1.8 EZH2 LINC00900 HSALNG0087364 LINC02698 CADM1
GH11J115761 Enhancer 0.3 FANTOM5 250.7 -0.8 -755 0.1 SPI1 LINC00900 AB372777-005 LINC02698 CADM1
GH11J115706 Enhancer 0.9 FANTOM5 Ensembl ENCODE 5.7 +51.9 51899 8.2 VEZF1 SPI1 BHLHE40 POLR2A MAX ZNF512 LINC00900 HSALNG0087361 HSALNG0087359 ENSG00000279771 LINC02698 CADM1
GH11J115696 Enhancer 0.8 FANTOM5 Ensembl CraniofacialAtlas 5.6 +64.2 64158 2.7 ZIC2 ZNF341 GLIS1 ZNF398 SP7 LINC00900 CADM1 HSALNG0087361 LINC02698 ENSG00000279771
GH11J115699 Enhancer 0.5 Ensembl ENCODE 5.7 +60.1 60127 2.7 ZIC2 FOXA2 LINC00900 HSALNG0087361 HSALNG0087359 ENSG00000279771 LINC02698 CADM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00900 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00900 Gene

Latest Assembly
chr11:115,752,704-115,760,799
(GRCh38/hg38)
Size:
8,096 bases
Orientation:
Minus strand

Previous Assembly
chr11:115,626,049-115,630,918
(GRCh37/hg19 by Entrez Gene)
Size:
4,870 bases
Orientation:
Minus strand

chr11:115,624,966-115,631,345
(GRCh37/hg19 by Ensembl)
Size:
6,380 bases
Orientation:
Minus strand

Genomic View for LINC00900 Gene

Genes around LINC00900 on UCSC Golden Path with GeneCards custom track
LINC00900 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00900 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00900 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00900 Gene

Proteins for LINC00900 Gene

Post-translational modifications for LINC00900 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00900 Gene

Domains & Families for LINC00900 Gene

Gene Families for LINC00900 Gene

genes like me logo Genes that share domains with LINC00900: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00900 Gene

Function for LINC00900 Gene

Phenotypes From GWAS Catalog for LINC00900 Gene

Phenotypes for LINC00900 Gene

genes like me logo Genes that share phenotypes with LINC00900: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00900 Gene

Localization for LINC00900 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00900 Gene

Pathways & Interactions for LINC00900 Gene

PathCards logo

SuperPathways for LINC00900 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00900 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00900 Gene

Drugs & Compounds for LINC00900 Gene

No Compound Related Data Available

Transcripts for LINC00900 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00900 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004CAB08_9606 lncRNA 3325 4

Ensembl: ENST00000499809 (view in UCSC) ,

LncBook: HSALNT0181523,

LNCipedia: LINC00900:9,

NONCODE: NONHSAT024319.2,

URS000005EF63_9606 lncRNA 982 4

Ensembl: ENST00000501294 (view in UCSC) ,

LncBook: HSALNT0181529,

LNCipedia: LINC00900:1,

NONCODE: NONHSAT024320.2,

URS00004E8132_9606 lncRNA 578 4

Ensembl: ENST00000602803 (view in UCSC) ,

LncBook: HSALNT0181538,

LNCipedia: LINC00900:12,

NONCODE: NONHSAT024322.2,

URS00004BA096_9606 lncRNA 995 3

Ensembl: ENST00000514294 (view in UCSC) ,

LncBook: HSALNT0181532, HSALNT0181533,

LNCipedia: LINC00900:21, LINC00900:7,

URS00000A7F2B_9606 lncRNA 693 3

Ensembl: ENST00000537070 (view in UCSC) ,

LncBook: HSALNT0181534,

LNCipedia: LINC00900:10,

LINC00900 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00900 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00900 Gene

No ASD Table

Relevant External Links for LINC00900 Gene

GeneLoc Exon Structure for
LINC00900

Expression for LINC00900 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00900 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00900

genes like me logo Genes that share expression patterns with LINC00900: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00900 Gene

Orthologs for LINC00900 Gene

Evolution for LINC00900 Gene

ENSEMBL:
Gene Tree for LINC00900 (if available)
TreeFam:
Gene Tree for LINC00900 (if available)

No data available for Orthologs for LINC00900 Gene

Paralogs for LINC00900 Gene

No data available for Paralogs for LINC00900 Gene

Variants for LINC00900 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00900 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00900 Gene

Variant ID Type Subtype PubMed ID
esv2750981 CNV gain 17911159

Additional Variant Information for LINC00900 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00900

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00900 Gene

Disorders for LINC00900 Gene

Additional Disease Information for LINC00900

No disorders were found for LINC00900 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00900 Gene

Publications for LINC00900 Gene

  1. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC00900 Gene

Sources for LINC00900 Gene