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Aliases for LINC00900 Gene

Subcategory (RNA class) for LINC00900 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00900 Gene

  • Long Intergenic Non-Protein Coding RNA 900 2 3 5
  • CTC-774J1.2 3

External Ids for LINC00900 Gene

Previous GeneCards Identifiers for LINC00900 Gene

  • GC11M115624

Summaries for LINC00900 Gene

GeneCards Summary for LINC00900 Gene

LINC00900 (Long Intergenic Non-Protein Coding RNA 900) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00900 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00900 Gene

Genomics for LINC00900 Gene

GeneHancer (GH) Regulatory Elements for LINC00900 Gene

Promoters and enhancers for LINC00900 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J115759 Promoter/Enhancer 0.9 Ensembl ENCODE 650.7 +0.5 518 1 POLR2A EZH2 LINC00900 GC11M115752 LOC101928985 ENSG00000256717
GH11J115761 Enhancer 0.2 FANTOM5 650.7 -0.9 -927 0.1 LINC00900 GC11M115752 ENSG00000256717
GH11J115709 Enhancer 1 FANTOM5 Ensembl ENCODE 5.1 +51.0 51020 1.2 POLR2A ZNF512 VEZF1 SPI1 LINC00900 LOC101928985 ENSG00000256717
GH11J115706 Enhancer 0.8 FANTOM5 Ensembl ENCODE 5.6 +53.3 53326 1.4 MAX LINC00900 LOC101928985 ENSG00000256717
GH11J115699 Enhancer 0.4 Ensembl ENCODE 4.8 +60.7 60708 1.2 LINC00900 LOC101928985 ENSG00000256717
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00900 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00900 Gene

Genomic Locations for LINC00900 Gene
chr11:115,754,248-115,760,627
(GRCh38/hg38)
Size:
6,380 bases
Orientation:
Minus strand
chr11:115,624,966-115,631,345
(GRCh37/hg19)
Size:
6,380 bases
Orientation:
Minus strand

Genomic View for LINC00900 Gene

Genes around LINC00900 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00900 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00900 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00900 Gene

Proteins for LINC00900 Gene

Post-translational modifications for LINC00900 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00900 Gene

Domains & Families for LINC00900 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00900 Gene

Function for LINC00900 Gene

Phenotypes for LINC00900 Gene

genes like me logo Genes that share phenotypes with LINC00900: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00900 Gene

Localization for LINC00900 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00900 Gene

Pathways & Interactions for LINC00900 Gene

SuperPathways for LINC00900 Gene

No Data Available

Interacting Proteins for LINC00900 Gene

Gene Ontology (GO) - Biological Process for LINC00900 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00900 Gene

Drugs & Compounds for LINC00900 Gene

No Compound Related Data Available

Transcripts for LINC00900 Gene

mRNA/cDNA for LINC00900 Gene

(13) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(7) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00900 Gene

No ASD Table

Relevant External Links for LINC00900 Gene

GeneLoc Exon Structure for
LINC00900
ECgene alternative splicing isoforms for
LINC00900

Expression for LINC00900 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00900 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00900 Gene:

LINC00900
genes like me logo Genes that share expression patterns with LINC00900: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00900 Gene

Orthologs for LINC00900 Gene

Evolution for LINC00900 Gene

ENSEMBL:
Gene Tree for LINC00900 (if available)
TreeFam:
Gene Tree for LINC00900 (if available)

No data available for Orthologs for LINC00900 Gene

Paralogs for LINC00900 Gene

No data available for Paralogs for LINC00900 Gene

Variants for LINC00900 Gene

Sequence variations from dbSNP and Humsavar for LINC00900 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1001144718 -- 115,758,543(-) G/T intron_variant
rs1001513783 -- 115,758,912(-) G/A intron_variant
rs1001542699 -- 115,759,871(-) G/A intron_variant
rs1001612914 -- 115,757,874(-) A/C intron_variant
rs1001873431 -- 115,760,812(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00900 Gene

Variant ID Type Subtype PubMed ID
esv2750981 CNV gain 17911159

Additional Variant Information for LINC00900 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00900

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00900 Gene

Disorders for LINC00900 Gene

Additional Disease Information for LINC00900

No disorders were found for LINC00900 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00900 Gene

Publications for LINC00900 Gene

  1. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC00900 Gene

Sources for LINC00900 Gene

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