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Aliases for LINC00899 Gene

Subcategory (RNA class) for LINC00899 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00899 Gene

  • Long Intergenic Non-Protein Coding RNA 899 2 3 5

External Ids for LINC00899 Gene

Previous GeneCards Identifiers for LINC00899 Gene

  • GC22M046439

Summaries for LINC00899 Gene

GeneCards Summary for LINC00899 Gene

LINC00899 (Long Intergenic Non-Protein Coding RNA 899) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00899 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00899 Gene

Genomics for LINC00899 Gene

GeneHancer (GH) Regulatory Elements for LINC00899 Gene

Promoters and enhancers for LINC00899 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J046040 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 673.8 +1.2 1188 6.5 FOXA2 SUZ12 ZFP64 ZNF223 SIN3A ZIC2 BRCA1 RARA YY1 E2F1 LINC00899 LOC642648 TTC38 GC22M046044 GC22M046033
GH22J046049 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 35 -27.9 -27872 45.7 HDGF PKNOX1 FOXA2 SMAD1 ZFP64 SIN3A FEZF1 ZNF2 IRF4 YY1 LOC642648 PRR34 CDPF1 TRMU LINC00899 ENSG00000273243 ATXN10 ENSG00000273287 FAM118A TTC38
GH22J046006 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 37.6 +34.1 34127 9.5 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 LINC00899 CDPF1 TRMU RPS10P31 ENSG00000273243 LOC642648 SMC1B PRR34-AS1 PRR34 MIRLET7BHG
GH22J046034 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 33.9 +7.8 7754 4.7 ZFP64 ARID4B SIN3A ZNF2 YY1 POLR2B E2F8 ZNF143 SP3 SP5 LINC00899 CDPF1 FBLN1 GC22M046033
GH22J045289 Enhancer 1.3 Ensembl ENCODE dbSUPER 37.6 +754.0 754018 2 HDGF PKNOX1 ZNF133 GLI4 ZNF2 GLIS2 ZNF416 ATF7 ZNF548 SP3 CDPF1 ENSG00000273243 LINC00899 FAM118A LOC642648 PHF21B RPS10P31 ENSG00000236079 FBLN1 SMC1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00899 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00899 Gene

Genomic Locations for LINC00899 Gene
chr22:46,039,907-46,044,868
(GRCh38/hg38)
Size:
4,962 bases
Orientation:
Minus strand
chr22:46,435,787-46,440,748
(GRCh37/hg19)
Size:
4,962 bases
Orientation:
Minus strand

Genomic View for LINC00899 Gene

Genes around LINC00899 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00899 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00899 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00899 Gene

Proteins for LINC00899 Gene

Post-translational modifications for LINC00899 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00899 Gene

Domains & Families for LINC00899 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00899 Gene

Function for LINC00899 Gene

Phenotypes From GWAS Catalog for LINC00899 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00899 Gene

Localization for LINC00899 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00899 Gene

Pathways & Interactions for LINC00899 Gene

SuperPathways for LINC00899 Gene

No Data Available

Interacting Proteins for LINC00899 Gene

Gene Ontology (GO) - Biological Process for LINC00899 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00899 Gene

Drugs & Compounds for LINC00899 Gene

No Compound Related Data Available

Transcripts for LINC00899 Gene

mRNA/cDNA for LINC00899 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00899 Gene

No ASD Table

Relevant External Links for LINC00899 Gene

GeneLoc Exon Structure for
LINC00899
ECgene alternative splicing isoforms for
LINC00899

Expression for LINC00899 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00899 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00899 Gene:

LINC00899
genes like me logo Genes that share expression patterns with LINC00899: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00899 Gene

Orthologs for LINC00899 Gene

Evolution for LINC00899 Gene

ENSEMBL:
Gene Tree for LINC00899 (if available)
TreeFam:
Gene Tree for LINC00899 (if available)

No data available for Orthologs for LINC00899 Gene

Paralogs for LINC00899 Gene

No data available for Paralogs for LINC00899 Gene

Variants for LINC00899 Gene

Sequence variations from dbSNP and Humsavar for LINC00899 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000721466 -- 46,044,338(-) C/G intron_variant
rs1001099073 -- 46,045,396(-) C/G upstream_transcript_variant
rs1001130101 -- 46,045,005(-) C/G upstream_transcript_variant
rs1001387149 -- 46,046,625(-) T/C upstream_transcript_variant
rs1001834596 -- 46,043,824(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00899 Gene

Variant ID Type Subtype PubMed ID
dgv2469n106 OTHER inversion 24896259
dgv776n67 CNV gain 20364138
nsv1127924 CNV deletion 24896259
nsv1152661 OTHER inversion 26484159
nsv471212 CNV loss 18288195
nsv829281 CNV gain 20364138
nsv829283 CNV gain 20364138
nsv829285 CNV gain 20364138

Additional Variant Information for LINC00899 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00899

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00899 Gene

Disorders for LINC00899 Gene

Additional Disease Information for LINC00899

No disorders were found for LINC00899 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00899 Gene

Publications for LINC00899 Gene

  1. Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G … Peterson K (Molecular vision 2002) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for LINC00899 Gene

Sources for LINC00899 Gene

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