Aliases for LINC00896 Gene

Subcategory (RNA class) for LINC00896 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00896 Gene

  • Long Intergenic Non-Protein Coding RNA 896 2 3 5
  • LINC00896 2 170
  • HSALNG0134114 169
  • NONHSAG033308 94

External Ids for LINC00896 Gene

Previous GeneCards Identifiers for LINC00896 Gene

  • GC22P020195

Summaries for LINC00896 Gene

GeneCards Summary for LINC00896 Gene

LINC00896 (Long Intergenic Non-Protein Coding RNA 896) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00896 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00896 Gene

Genomics for LINC00896 Gene

GeneHancer (GH) Regulatory Elements for LINC00896 Gene

Promoters and enhancers for LINC00896 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00896 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00896 Gene

Genomic Locations for LINC00896 Gene
chr22:20,206,332-20,208,537
(GRCh38/hg38)
Size:
2,206 bases
Orientation:
Plus strand
chr22:20,193,855-20,196,060
(GRCh37/hg19)
Size:
2,206 bases
Orientation:
Plus strand

Genomic View for LINC00896 Gene

Genes around LINC00896 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00896 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00896 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00896 Gene

Proteins for LINC00896 Gene

Post-translational modifications for LINC00896 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00896 Gene

Domains & Families for LINC00896 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00896 Gene

Function for LINC00896 Gene

Phenotypes From GWAS Catalog for LINC00896 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00896 Gene

Localization for LINC00896 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00896 Gene

Pathways & Interactions for LINC00896 Gene

PathCards logo

SuperPathways for LINC00896 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00896 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00896 Gene

Drugs & Compounds for LINC00896 Gene

No Compound Related Data Available

Transcripts for LINC00896 Gene

mRNA/cDNA for LINC00896 Gene

(2) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(5) LNCipedia transcripts :
(1) LncBook transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00896 Gene

No ASD Table

Relevant External Links for LINC00896 Gene

GeneLoc Exon Structure for
LINC00896
ECgene alternative splicing isoforms for
LINC00896

Expression for LINC00896 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00896 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00896 Gene

This gene is overexpressed in Pituitary (x13.2), Thyroid (x11.5), and Liver (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of LINC00896 Gene:

LINC00896

Evidence on tissue expression from TISSUES for LINC00896 Gene

  • Nervous system(2.7)
genes like me logo Genes that share expression patterns with LINC00896: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00896 Gene

Orthologs for LINC00896 Gene

Evolution for LINC00896 Gene

ENSEMBL:
Gene Tree for LINC00896 (if available)
TreeFam:
Gene Tree for LINC00896 (if available)

No data available for Orthologs for LINC00896 Gene

Paralogs for LINC00896 Gene

No data available for Paralogs for LINC00896 Gene

Variants for LINC00896 Gene

Sequence variations from dbSNP and Humsavar for LINC00896 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000924740 -- 20,204,981(+) C/T upstream_transcript_variant
rs1001388446 -- 20,208,580(+) C/T downstream_transcript_variant
rs1002737890 -- 20,204,754(+) C/T upstream_transcript_variant
rs1003472495 -- 20,206,544(+) G/A non_coding_transcript_variant
rs1004730849 -- 20,207,114(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00896 Gene

Variant ID Type Subtype PubMed ID
dgv4480n100 CNV gain 25217958
dgv4481n100 CNV gain 25217958
dgv4482n100 CNV gain 25217958
dgv726n67 CNV gain 20364138
dgv7983n54 CNV gain 21841781
esv2758825 CNV loss 17122850
esv3893434 CNV gain 25118596
nsv1060294 CNV gain 25217958
nsv471183 CNV loss 18288195
nsv471184 CNV gain 18288195
nsv828938 CNV gain 20364138
nsv828939 CNV loss 20364138
nsv834134 CNV loss 17160897
nsv953027 CNV deletion 24416366

Additional Variant Information for LINC00896 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00896

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00896 Gene

Disorders for LINC00896 Gene

Additional Disease Information for LINC00896

No disorders were found for LINC00896 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00896 Gene

Publications for LINC00896 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  2. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins JE … Dunham I (Genome biology 2004) 3 56

Products for LINC00896 Gene

Sources for LINC00896 Gene