Aliases for LINC00895 Gene

Data sources for LINC00895 Gene:

Subcategory (RNA class) for LINC00895 Gene

lncRNA

Aliases for LINC00895 Gene

External Ids for LINC00895 Gene

Previous GeneCards Identifiers for LINC00895 Gene

  • GC22M019555

Summaries for LINC00895 Gene

GeneCards Summary for LINC00895 Gene

LINC00895 (Long Intergenic Non-Protein Coding RNA 895) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00895 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00895 Gene

Genomics for LINC00895 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00895 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J019565 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 250.7 -0.4 -438 4.5 CEBPB PRDM10 MCM5 JUND NRF1 L3MBTL2 PYGO2 MCM2 GMEB1 ATF1 LINC00895 RPL7AP70 UFD1 DGCR11 HSALNG0134029 CLDN5 SEPTIN5
GH22J019576 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 -11.7 -11680 5.4 IKZF1 MBD2 BHLHE40 ARNT ZNF623 ZNF395 VEZF1 RUNX1 ZEB2 GABPA DGCR8 TRMT2A CLDN5 MED15 DGCR11 CDC45 UFD1 RANBP1 LINC01311 ENSG00000215493
GH22J019521 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +43.8 43820 4.4 ZIC2 SAFB MYNN CBX1 POLR2A SUPT5H STAT5A ZBTB33 HNRNPL SP1 CLDN5 ENSG00000287652 UFD1 MED15 RPL7AP70 DGCR11 ENSG00000185065 CDC45 LINC00895
GH22J019554 Enhancer 1 Ensembl ENCODE 0.4 +12.0 11981 1.4 ZFP64 ZNF217 CTCF FOXA2 SMAD4 SAP130 ZNF341 CTBP1 TEAD3 YY1 CLDN5 LINC00895 SEPTIN5
GH22J019571 Enhancer 0.6 Ensembl 0.7 -4.7 -4680 1.8 BHLHE40 FOSL1 USF2 MCM5 RAD51 MEIS2 KLF1 PHF21A ID3 RNF2 DGCR8 RPL7AP70 CLDN5 TRMT2A LINC01311 ENSG00000215493 UFD1 E2F6P1 ZDHHC8 DGCR11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00895 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00895 Gene

Latest Assembly
chr22:19,461,044-19,567,021
(GRCh38/hg38)
Size:
105,978 bases
Orientation:
Minus strand

Previous Assembly
chr22:19,553,653-19,554,362
(GRCh37/hg19 by Entrez Gene)
Size:
710 bases
Orientation:
Minus strand

Genomic View for LINC00895 Gene

Genes around LINC00895 on UCSC Golden Path with GeneCards custom track
LINC00895 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00895 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00895 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00895 Gene

Proteins for LINC00895 Gene

Post-translational modifications for LINC00895 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00895 Gene

Domains & Families for LINC00895 Gene

Gene Families for LINC00895 Gene

genes like me logo Genes that share domains with LINC00895: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00895 Gene

Function for LINC00895 Gene

Phenotypes From GWAS Catalog for LINC00895 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00895 Gene

Localization for LINC00895 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00895 Gene

Pathways & Interactions for LINC00895 Gene

PathCards logo

SuperPathways for LINC00895 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00895 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00895 Gene

Drugs & Compounds for LINC00895 Gene

No Compound Related Data Available

Transcripts for LINC00895 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00895 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000811E6A_9606 lncRNA 1638 3

Ensembl: ENST00000629028 (view in UCSC) ,

LNCipedia: LINC00895:10,

NONCODE: NONHSAT192638.1,

URS000075CCA2_9606 lncRNA 710 2

RefSeq: NR_024381,

LNCipedia: LINC00895:9,

URS00008BC813_9606 lncRNA 660 3

LncBook: HSALNT0275283,

LNCipedia: LINC00895:13,

NONCODE: NONHSAT083416.2,

URS00008B880E_9606 lncRNA 2017 2

LNCipedia: LINC00895:15,

NONCODE: NONHSAT083414.2,

URS00008B7073_9606 lncRNA 1774 2

LNCipedia: LINC00895:11,

NONCODE: NONHSAT192635.1,

LINC00895 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00895 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00895 Gene

No ASD Table

Relevant External Links for LINC00895 Gene

GeneLoc Exon Structure for
LINC00895

Expression for LINC00895 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00895

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00895 Gene

Orthologs for LINC00895 Gene

Evolution for LINC00895 Gene

ENSEMBL:
Gene Tree for LINC00895 (if available)
TreeFam:
Gene Tree for LINC00895 (if available)

No data available for Orthologs for LINC00895 Gene

Paralogs for LINC00895 Gene

No data available for Paralogs for LINC00895 Gene

Variants for LINC00895 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00895 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00895 Gene

Variant ID Type Subtype PubMed ID
dgv825e214 CNV loss 21293372
esv2659558 CNV deletion 23128226
esv2751940 CNV gain 17911159
esv3575418 CNV gain 25503493
esv3647275 CNV gain 21293372
esv3647276 CNV gain 21293372
esv3893434 CNV gain 25118596
nsv588216 CNV gain 21841781
nsv834127 CNV loss 17160897

Additional Variant Information for LINC00895 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00895

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00895 Gene

Disorders for LINC00895 Gene

Additional Disease Information for LINC00895

No disorders were found for LINC00895 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00895 Gene

Publications for LINC00895 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00895 Gene

Sources for LINC00895 Gene