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Aliases for LINC00894 Gene

Subcategory (RNA class) for LINC00894 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00894 Gene

  • Long Intergenic Non-Protein Coding RNA 894 2 3 5

External Ids for LINC00894 Gene

Previous GeneCards Identifiers for LINC00894 Gene

  • GC0XP149118

Summaries for LINC00894 Gene

GeneCards Summary for LINC00894 Gene

LINC00894 (Long Intergenic Non-Protein Coding RNA 894) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00894 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00894 Gene

Genomics for LINC00894 Gene

GeneHancer (GH) Regulatory Elements for LINC00894 Gene

Promoters and enhancers for LINC00894 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ149937 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 664.3 +0.7 672 3.8 HDGF PKNOX1 CLOCK ARNT ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 CXorf40B LINC00894 XRCC6P2 IDS2 LOC643015 GC0XM150008
GH0XJ150691 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 19.8 +756.1 756122 6.9 NEUROD1 SIN3A YY1 GLIS2 ELK1 ZNF143 ATF7 RUNX3 SP3 REST MTMR1 LINC00894 CXorf40B MTM1 PIR43679
GH0XJ150897 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 12.8 +960.2 960175 2.5 ATF1 BRCA1 YY1 POLR2B GLIS2 GATA2 ATF7 ZNF263 SP3 REST CD99L2 CXorf40B LINC00894 PPIAP91
GH0XJ149502 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.6 -434.0 -434021 4.2 HDGF PKNOX1 SIN3A YBX1 ZBTB7B ZNF143 FOS SP3 REST KAT8 GC0XP149503 IDS CXorf40A LINC00893 ENSG00000241489 TMEM185AP1 CXorf40B LINC00894 IDS2
GH0XJ149881 Promoter 1 EPDnew 13 -57.4 -57384 0.1 ZNF263 ATF1 REST NFXL1 ZEB2 ZBTB40 GABPA CTBP1 MTA3 POLR2A MAGEA8 CXorf40B LINC00894 IDS2 LINC00893 MAGEA8-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00894 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00894 Gene

Genomic Locations for LINC00894 Gene
chrX:149,938,548-150,224,580
(GRCh38/hg38)
Size:
286,033 bases
Orientation:
Plus strand
chrX:149,106,766-149,392,815
(GRCh37/hg19)
Size:
286,050 bases
Orientation:
Plus strand

Genomic View for LINC00894 Gene

Genes around LINC00894 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00894 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00894 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00894 Gene

Proteins for LINC00894 Gene

Post-translational modifications for LINC00894 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00894 Gene

Domains & Families for LINC00894 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00894 Gene

Function for LINC00894 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00894 Gene

Localization for LINC00894 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00894 Gene

Pathways & Interactions for LINC00894 Gene

SuperPathways for LINC00894 Gene

No Data Available

Interacting Proteins for LINC00894 Gene

Gene Ontology (GO) - Biological Process for LINC00894 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00894 Gene

Drugs & Compounds for LINC00894 Gene

No Compound Related Data Available

Transcripts for LINC00894 Gene

mRNA/cDNA for LINC00894 Gene

(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(10) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00894 Gene

No ASD Table

Relevant External Links for LINC00894 Gene

GeneLoc Exon Structure for
LINC00894
ECgene alternative splicing isoforms for
LINC00894

Expression for LINC00894 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00894 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00894 Gene

This gene is overexpressed in Pituitary (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC00894 Gene:

LINC00894
genes like me logo Genes that share expression patterns with LINC00894: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00894 Gene

Orthologs for LINC00894 Gene

Evolution for LINC00894 Gene

ENSEMBL:
Gene Tree for LINC00894 (if available)
TreeFam:
Gene Tree for LINC00894 (if available)

No data available for Orthologs for LINC00894 Gene

Paralogs for LINC00894 Gene

No data available for Paralogs for LINC00894 Gene

Variants for LINC00894 Gene

Sequence variations from dbSNP and Humsavar for LINC00894 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000145339 -- 150,013,124(+) C/G intron_variant
rs1000192253 -- 149,965,955(+) C/G intron_variant
rs1000427120 -- 149,955,568(+) A/T intron_variant
rs1000554237 -- 149,998,351(+) C/G intron_variant
rs1000587518 -- 149,963,411(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00894 Gene

Variant ID Type Subtype PubMed ID
nsv9996 CNV gain 18304495
nsv7464 OTHER inversion 18451855
nsv525908 CNV gain 19592680
nsv481007 CNV novel sequence insertion 20440878
nsv425357 CNV insertion 16902084
nsv1076282 CNV deletion 25765185
esv3577519 CNV gain 25503493
esv25286 CNV gain 19812545
dgv4316n106 CNV deletion 24896259

Additional Variant Information for LINC00894 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00894

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00894 Gene

Disorders for LINC00894 Gene

Additional Disease Information for LINC00894

No disorders were found for LINC00894 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00894 Gene

Publications for LINC00894 Gene

  1. Downregulation of LINC00894-002 Contributes to Tamoxifen Resistance by Enhancing the TGF-β Signaling Pathway. (PMID: 29738694) Zhang X … Wang X (Biochemistry. Biokhimiia 2018) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Molecular and phenotypic variation in patients with severe Hunter syndrome. (PMID: 9147653) Timms KM … Gibbs RA (Human molecular genetics 1997) 3 58

Products for LINC00894 Gene

Sources for LINC00894 Gene

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