Aliases for LINC00888 Gene

Subcategory (RNA class) for LINC00888 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00888 Gene

  • Long Intergenic Non-Protein Coding RNA 888 2 3 5
  • Lnc-B3GNT5-11 168
  • NONHSAG036820 92
  • HSALNG0031153 167
  • LINC00888 2

External Ids for LINC00888 Gene

Previous GeneCards Identifiers for LINC00888 Gene

  • GC03P183167
  • GC03P183181

Summaries for LINC00888 Gene

GeneCards Summary for LINC00888 Gene

LINC00888 (Long Intergenic Non-Protein Coding RNA 888) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC00888 Gene

  • Small nucleolar RNA SNORA63

Additional gene information for LINC00888 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC00888 Gene

Genomics for LINC00888 Gene

GeneHancer (GH) Regulatory Elements for LINC00888 Gene


GeneHancers around LINC00888 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00888 Gene

Genomic Locations for LINC00888 Gene
chr3:183,447,586-183,456,024
(GRCh38/hg38)
Size:
8,439 bases
Orientation:
Plus strand
chr3:183,165,396-183,173,801
(GRCh37/hg19)
Size:
8,406 bases
Orientation:
Plus strand

Genomic View for LINC00888 Gene

Genes around LINC00888 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00888 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00888 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00888 Gene

Proteins for LINC00888 Gene

Post-translational modifications for LINC00888 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00888 Gene

Domains & Families for LINC00888 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00888 Gene

Function for LINC00888 Gene

Phenotypes From GWAS Catalog for LINC00888 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00888 Gene

Localization for LINC00888 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00888 Gene

Pathways & Interactions for LINC00888 Gene

PathCards logo

SuperPathways for LINC00888 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00888 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00888 Gene

Drugs & Compounds for LINC00888 Gene

No Compound Related Data Available

Transcripts for LINC00888 Gene

mRNA/cDNA for LINC00888 Gene

12 RNACentral transcripts :
2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
3 LncBook transcripts :
9 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00888 Gene

No ASD Table

Relevant External Links for LINC00888 Gene

GeneLoc Exon Structure for
LINC00888

Expression for LINC00888 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00888 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00888

genes like me logo Genes that share expression patterns with LINC00888: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00888 Gene

Orthologs for LINC00888 Gene

Evolution for LINC00888 Gene

ENSEMBL:
Gene Tree for LINC00888 (if available)
TreeFam:
Gene Tree for LINC00888 (if available)

No data available for Orthologs for LINC00888 Gene

Paralogs for LINC00888 Gene

No data available for Paralogs for LINC00888 Gene

Variants for LINC00888 Gene

Additional dbSNP identifiers (rs#s) for LINC00888 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00888 Gene

Variant ID Type Subtype PubMed ID
nsv1006872 CNV loss 25217958

Additional Variant Information for LINC00888 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00888

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00888 Gene

Disorders for LINC00888 Gene

Additional Disease Information for LINC00888

No disorders were found for LINC00888 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00888 Gene

Publications for LINC00888 Gene

  1. Characterization of long noncoding RNA and messenger RNA signatures in melanoma tumorigenesis and metastasis. (PMID: 28225791) Wang S … Han P (PloS one 2017) 2 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

Products for LINC00888 Gene

Sources for LINC00888 Gene