Aliases for LINC00886 Gene

Subcategory (RNA class) for LINC00886 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00886 Gene

  • Long Intergenic Non-Protein Coding RNA 886 2 3 5
  • LINC00886 2 5 165
  • NONHSAG036477.2 91
  • HSALNG0030069 164

External Ids for LINC00886 Gene

Previous GeneCards Identifiers for LINC00886 Gene

  • GC03M156467

Summaries for LINC00886 Gene

GeneCards Summary for LINC00886 Gene

LINC00886 (Long Intergenic Non-Protein Coding RNA 886) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00886 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00886 Gene

Genomics for LINC00886 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00886 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00886 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00886 Gene

Genomic Locations for LINC00886 Gene
chr3:156,742,404-156,818,519
(GRCh38/hg38)
Size:
76,116 bases
Orientation:
Minus strand
chr3:156,465,132-156,534,851
(GRCh37/hg19)
Size:
69,720 bases
Orientation:
Minus strand

Genomic View for LINC00886 Gene

Genes around LINC00886 on UCSC Golden Path with GeneCards custom track
LINC00886 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00886 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00886 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00886 Gene

Proteins for LINC00886 Gene

Post-translational modifications for LINC00886 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00886 Gene

Domains & Families for LINC00886 Gene

Gene Families for LINC00886 Gene

genes like me logo Genes that share domains with LINC00886: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00886 Gene

Function for LINC00886 Gene

Phenotypes From GWAS Catalog for LINC00886 Gene

Phenotypes for LINC00886 Gene

genes like me logo Genes that share phenotypes with LINC00886: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00886 Gene

Localization for LINC00886 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00886 Gene

Pathways & Interactions for LINC00886 Gene

PathCards logo

SuperPathways for LINC00886 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00886 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00886 Gene

Drugs & Compounds for LINC00886 Gene

No Compound Related Data Available

Transcripts for LINC00886 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00886 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000414B15_9606 lncRNA 566 4

Ensembl: ENST00000473352 (view in UCSC) ,

LncBook: HSALNT0062789,

LNCipedia: LINC00886:2,

NONCODE: NONHSAT092866.2,

URS000075C503_9606 lncRNA 3337 2

HGNC: 48572,

RefSeq: NR_038387,

URS000022C3C4_9606 lncRNA 3306 2

Ensembl: ENST00000472943 (view in UCSC) ,

LNCipedia: LINC00886:4,

URS0000EF34C5_9606 lncRNA 3215 1

Ensembl: ENST00000488584 (view in UCSC) ,

URS0000EF30F6_9606 lncRNA 533 1

Ensembl: ENST00000654528 (view in UCSC) ,

LINC00886 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00886 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00886 Gene

No ASD Table

Relevant External Links for LINC00886 Gene

GeneLoc Exon Structure for
LINC00886

Expression for LINC00886 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00886 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00886

genes like me logo Genes that share expression patterns with LINC00886: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00886 Gene

Orthologs for LINC00886 Gene

Evolution for LINC00886 Gene

ENSEMBL:
Gene Tree for LINC00886 (if available)
TreeFam:
Gene Tree for LINC00886 (if available)

No data available for Orthologs for LINC00886 Gene

Paralogs for LINC00886 Gene

No data available for Paralogs for LINC00886 Gene

Variants for LINC00886 Gene

Additional dbSNP identifiers (rs#s) for LINC00886 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00886 Gene

Variant ID Type Subtype PubMed ID
esv3598306 CNV loss 21293372
nsv967081 CNV duplication 23825009

Additional Variant Information for LINC00886 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00886

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00886 Gene

Disorders for LINC00886 Gene

No disorders were found for LINC00886 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00886 Gene

Publications for LINC00886 Gene

  1. p53-inducible long non-coding RNA PICART1 mediates cancer cell proliferation and migration. (PMID: 28339031) Cao Y … Cao D (International journal of oncology 2017) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for LINC00886 Gene

Sources for LINC00886 Gene