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Aliases for LINC00886 Gene

Subcategory (RNA class) for LINC00886 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00886 Gene

  • Long Intergenic Non-Protein Coding RNA 886 2 3 5

External Ids for LINC00886 Gene

Previous GeneCards Identifiers for LINC00886 Gene

  • GC03M156467

Summaries for LINC00886 Gene

GeneCards Summary for LINC00886 Gene

LINC00886 (Long Intergenic Non-Protein Coding RNA 886) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00886 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00886 Gene

Genomics for LINC00886 Gene

GeneHancer (GH) Regulatory Elements for LINC00886 Gene

Promoters and enhancers for LINC00886 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J156814 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 695.4 -0.6 -642 6.8 CLOCK SMAD1 ARNT SIN3A FEZF1 ZNF2 IRF4 YY1 ZNF207 ZNF143 LINC00886 GC03M156815 GMPS CCNL1 LEKR1 TIPARP
GH03J156824 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 44.9 -8.9 -8931 3.8 HDGF PKNOX1 SMAD1 ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 ZBTB7B LEKR1 LINC00886 CCNL1 GC03P156914
GH03J156673 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 27.4 +136.6 136551 14.4 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 TIPARP CCNL1 LINC00886 LEKR1 SSR3 TIPARP-AS1 PIR33904 METTL15P1
GH03J156809 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 44 +5.1 5117 4.1 PKNOX1 CLOCK SMAD1 FOXA2 ARNT ARID4B NEUROD1 SIN3A FEZF1 YY1 PA2G4P4 LINC00886 CCNL1 LEKR1 TIPARP GC03P156804
GH03J156781 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 30 +33.6 33591 4.9 ATF1 SIN3A TCF12 ZNF766 CBX5 E2F8 ZFP91 ATF7 FOS NCOA1 LINC00886 LEKR1 SSR3 GC03P156804 METTL15P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00886 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00886 Gene

Genomic Locations for LINC00886 Gene
chr3:156,747,343-156,817,062
(GRCh38/hg38)
Size:
69,720 bases
Orientation:
Minus strand
chr3:156,465,132-156,534,851
(GRCh37/hg19)
Size:
69,720 bases
Orientation:
Minus strand

Genomic View for LINC00886 Gene

Genes around LINC00886 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00886 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00886 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00886 Gene

Proteins for LINC00886 Gene

Post-translational modifications for LINC00886 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00886 Gene

Domains & Families for LINC00886 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00886 Gene

Function for LINC00886 Gene

Phenotypes From GWAS Catalog for LINC00886 Gene

Phenotypes for LINC00886 Gene

genes like me logo Genes that share phenotypes with LINC00886: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00886 Gene

Localization for LINC00886 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00886 Gene

Pathways & Interactions for LINC00886 Gene

SuperPathways for LINC00886 Gene

No Data Available

Interacting Proteins for LINC00886 Gene

Gene Ontology (GO) - Biological Process for LINC00886 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00886 Gene

Drugs & Compounds for LINC00886 Gene

No Compound Related Data Available

Transcripts for LINC00886 Gene

mRNA/cDNA for LINC00886 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00886 Gene

No ASD Table

Relevant External Links for LINC00886 Gene

GeneLoc Exon Structure for
LINC00886
ECgene alternative splicing isoforms for
LINC00886

Expression for LINC00886 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00886 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00886 Gene:

LINC00886
genes like me logo Genes that share expression patterns with LINC00886: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00886 Gene

Orthologs for LINC00886 Gene

Evolution for LINC00886 Gene

ENSEMBL:
Gene Tree for LINC00886 (if available)
TreeFam:
Gene Tree for LINC00886 (if available)

No data available for Orthologs for LINC00886 Gene

Paralogs for LINC00886 Gene

No data available for Paralogs for LINC00886 Gene

Variants for LINC00886 Gene

Sequence variations from dbSNP and Humsavar for LINC00886 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000036634 -- 156,810,185(-) T/C intron_variant
rs1000052959 -- 156,791,096(-) T/A intron_variant
rs1000061663 -- 156,750,734(-) C/A intron_variant
rs1000104662 -- 156,756,313(-) C/T intron_variant
rs1000165055 -- 156,789,461(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00886 Gene

Variant ID Type Subtype PubMed ID
esv3598306 CNV loss 21293372
nsv967081 CNV duplication 23825009

Additional Variant Information for LINC00886 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00886

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00886 Gene

Disorders for LINC00886 Gene

Additional Disease Information for LINC00886

No disorders were found for LINC00886 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00886 Gene

Publications for LINC00886 Gene

  1. p53-inducible long non-coding RNA PICART1 mediates cancer cell proliferation and migration. (PMID: 28339031) Cao Y … Cao D (International journal of oncology 2017) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LINC00886 Gene

Sources for LINC00886 Gene

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