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Aliases for LINC00885 Gene

Subcategory (RNA class) for LINC00885 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC00885 Gene

  • Long Intergenic Non-Protein Coding RNA 885 2 3 5

External Ids for LINC00885 Gene

Previous GeneCards Identifiers for LINC00885 Gene

  • GC03P195872

Summaries for LINC00885 Gene

GeneCards Summary for LINC00885 Gene

LINC00885 (Long Intergenic Non-Protein Coding RNA 885) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00885 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00885 Gene

Genomics for LINC00885 Gene

GeneHancer (GH) Regulatory Elements for LINC00885 Gene

Promoters and enhancers for LINC00885 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I196135 Enhancer 1.4 Ensembl ENCODE dbSUPER 557.6 -1.4 -1416 11.4 HDGF FOXA2 PKNOX1 ARNT NEUROD1 SIN3A YY1 POLR2B ZNF766 E2F8 LINC00885 SDHAP1 SDHAP2 LINC00969 ACAP2 RNU6ATAC24P UBXN7 SLC51A WDR53 GC03M196081
GH03I196190 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 6.3 +49.8 49765 5.6 HDGF PKNOX1 ARID4B YBX1 IRF4 TCF12 ZNF766 GATA2 ZNF207 ZNF143 LOC105374303 RNU7-18P TFRC TM4SF19 RNU6-910P SLC51A UBXN7 LINC00885 MUC4 SMCO1
GH03I196177 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 6.1 +38.3 38343 7.1 HDGF PKNOX1 ATF1 SMAD1 ARNT IRF4 TCF12 ZNF766 GATA2 ZNF207 GC03M196172 TFRC RNU7-18P SLC51A LINC00885 TCTEX1D2 NRROS RNF168 UBXN7 PCYT1A
GH03I196126 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -15.0 -15046 2.5 HDGF PKNOX1 SMAD1 ATF1 ARNT TCF12 ZNF121 POLR2B CBX5 GATA2 TFRC MUC4 MUC20 LINC00885 GC03M196081
GH03I196119 Enhancer 1.7 VISTA FANTOM5 Ensembl ENCODE dbSUPER 0.3 -20.8 -20790 4.7 HDGF RUNX3 JUNB REST ZNF592 ATF4 MAFF SMARCA4 KDM1A BACH1 MUC4 TFRC RNU7-18P MUC20 FBXO45 GC03M196081 LINC00885
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00885 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00885 Gene

Genomic Locations for LINC00885 Gene
18,255 bases
Plus strand

Genomic View for LINC00885 Gene

Genes around LINC00885 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00885 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00885 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00885 Gene

Proteins for LINC00885 Gene

Post-translational modifications for LINC00885 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00885 Gene

Domains & Families for LINC00885 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00885 Gene

Function for LINC00885 Gene

Phenotypes From GWAS Catalog for LINC00885 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00885 Gene

Localization for LINC00885 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00885 Gene

Pathways & Interactions for LINC00885 Gene

SuperPathways for LINC00885 Gene

No Data Available

Interacting Proteins for LINC00885 Gene

Gene Ontology (GO) - Biological Process for LINC00885 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC00885 Gene

Drugs & Compounds for LINC00885 Gene

No Compound Related Data Available

Transcripts for LINC00885 Gene

mRNA/cDNA for LINC00885 Gene

(1) REFSEQ mRNAs :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00885 Gene

No ASD Table

Relevant External Links for LINC00885 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC00885 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00885 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00885 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x7.5), Skin - Sun Exposed (Lower leg) (x6.9), Bladder (x6.1), Esophagus - Mucosa (x5.8), Liver (x5.7), and Minor Salivary Gland (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of LINC00885 Gene:

genes like me logo Genes that share expression patterns with LINC00885: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00885 Gene

Orthologs for LINC00885 Gene

Evolution for LINC00885 Gene

Gene Tree for LINC00885 (if available)
Gene Tree for LINC00885 (if available)

No data available for Orthologs for LINC00885 Gene

Paralogs for LINC00885 Gene

No data available for Paralogs for LINC00885 Gene

Variants for LINC00885 Gene

Sequence variations from dbSNP and Humsavar for LINC00885 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000008297 -- 196,148,071(+) T/A intron_variant
rs1000067507 -- 196,141,261(+) C/T upstream_transcript_variant
rs1000100862 -- 196,153,784(+) C/T intron_variant
rs1000213285 -- 196,158,978(+) C/T intron_variant
rs1000244334 -- 196,159,220(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00885 Gene

Variant ID Type Subtype PubMed ID
esv2759213 CNV gain+loss 17122850
esv3599273 CNV loss 21293372
nsv1002584 CNV gain 25217958
nsv1008512 CNV gain 25217958
nsv1009811 CNV gain 25217958
nsv593069 CNV gain 21841781
nsv593070 CNV loss 21841781
nsv593071 CNV gain 21841781
nsv997797 CNV gain 25217958

Additional Variant Information for LINC00885 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00885 Gene

Disorders for LINC00885 Gene

Additional Disease Information for LINC00885

No disorders were found for LINC00885 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00885 Gene

Publications for LINC00885 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00885 Gene

Sources for LINC00885 Gene

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