Aliases for LINC00880 Gene

Subcategory (RNA class) for LINC00880 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00880 Gene

  • Long Intergenic Non-Protein Coding RNA 880 2 3 5
  • LINC00880 2 168
  • HSALNG0030090 167
  • NONHSAG036485 92

External Ids for LINC00880 Gene

Previous GeneCards Identifiers for LINC00880 Gene

  • GC03M156802

Summaries for LINC00880 Gene

GeneCards Summary for LINC00880 Gene

LINC00880 (Long Intergenic Non-Protein Coding RNA 880) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00880 include Lung Cancer and Spinal Cord Ependymoma.

Additional gene information for LINC00880 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00880 Gene

Genomics for LINC00880 Gene

GeneHancer (GH) Regulatory Elements for LINC00880 Gene

Promoters and enhancers for LINC00880 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00880 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00880 Gene

Genomic Locations for LINC00880 Gene
chr3:157,081,666-157,128,595
(GRCh38/hg38)
Size:
46,930 bases
Orientation:
Minus strand
chr3:156,799,456-156,840,793
(GRCh37/hg19)
Size:
41,338 bases
Orientation:
Minus strand

Genomic View for LINC00880 Gene

Genes around LINC00880 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00880 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00880 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00880 Gene

Proteins for LINC00880 Gene

Post-translational modifications for LINC00880 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00880 Gene

Domains & Families for LINC00880 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00880 Gene

Function for LINC00880 Gene

Phenotypes From GWAS Catalog for LINC00880 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00880 Gene

Localization for LINC00880 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00880 Gene

Pathways & Interactions for LINC00880 Gene

PathCards logo

SuperPathways for LINC00880 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00880 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00880 Gene

Drugs & Compounds for LINC00880 Gene

No Compound Related Data Available

Transcripts for LINC00880 Gene

mRNA/cDNA for LINC00880 Gene

8 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
2 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00880 Gene

No ASD Table

Relevant External Links for LINC00880 Gene

GeneLoc Exon Structure for
LINC00880

Expression for LINC00880 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00880 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00880 Gene

This gene is overexpressed in Pituitary (x14.3) and Brain - Hypothalamus (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00880

genes like me logo Genes that share expression patterns with LINC00880: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00880 Gene

Orthologs for LINC00880 Gene

Evolution for LINC00880 Gene

ENSEMBL:
Gene Tree for LINC00880 (if available)
TreeFam:
Gene Tree for LINC00880 (if available)

No data available for Orthologs for LINC00880 Gene

Paralogs for LINC00880 Gene

No data available for Paralogs for LINC00880 Gene

Variants for LINC00880 Gene

Additional dbSNP identifiers (rs#s) for LINC00880 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00880 Gene

Variant ID Type Subtype PubMed ID
nsv829766 CNV gain 17160897

Additional Variant Information for LINC00880 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00880

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00880 Gene

Disorders for LINC00880 Gene

MalaCards: The human disease database

(4) MalaCards diseases for LINC00880 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
lung cancer
  • adenocarcinoma of lung
spinal cord ependymoma
  • ependymal neoplasm of the spinal cord
spinal cord glioma
  • glial neoplasm spinal cord
spinal cancer
  • spinal cord cancer
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00880

genes like me logo Genes that share disorders with LINC00880: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00880 Gene

Publications for LINC00880 Gene

  1. LncRNA LINC00880 promotes cell proliferation, migration, and invasion while inhibiting apoptosis by targeting CACNG5 through the MAPK signaling pathway in spinal cord ependymoma. (PMID: 29215699) Wu DM … Zheng YL (Journal of cellular physiology 2018) 2 3 54
  2. Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits. (PMID: 22911880) Boraska V … Zeggini E (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2012) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC00880 Gene

Sources for LINC00880 Gene